NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026743

3300026743: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026743 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072034 | Ga0207613
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size21652836
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014274Metagenome264Y
F015492Metagenome / Metatranscriptome254Y
F015863Metagenome / Metatranscriptome251Y
F022685Metagenome / Metatranscriptome213N
F029264Metagenome / Metatranscriptome189Y
F034742Metagenome174N
F041344Metagenome / Metatranscriptome160Y
F088662Metagenome109Y
F097964Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207613_100304Not Available756Open in IMG/M
Ga0207613_101014All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium610Open in IMG/M
Ga0207613_101100All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium599Open in IMG/M
Ga0207613_101663Not Available550Open in IMG/M
Ga0207613_102092Not Available524Open in IMG/M
Ga0207613_102353All Organisms → cellular organisms → Bacteria511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207613_100304Ga0207613_1003041F022685LMKAILGLALGIALMSALQTVGVWSLQEHIKSQSNAGLPIGNTPVVGNFDADALKNGILPKLGPIDTSEGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207613_100304Ga0207613_1003042F015863YASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVRRFYTEQLTAEGFEVSDLGLMGLNPPTAALLGIDGMLSAKRPSTDDAIDVQIRTPDGIIPSRLLQIHWRKISATPG
Ga0207613_101014Ga0207613_1010141F034742QRTTETWTFLVGPPLTRLQFHRAIGTASIASQIVSVQNTPREFTVNIHSVEADWDDENQKVNVRVEIGIIANGATVTVTQIRYWVAILAQM
Ga0207613_101091Ga0207613_1010911F029264MEHFAIGANFEGAAARRNQRKRCDALTELENFGRQTDGLRRVVSNDAVFD
Ga0207613_101100Ga0207613_1011002F088662MITVAKSARYPREMLRVPERGSGGEMADKNFTDLNFAGLLAFDRAKR
Ga0207613_101416Ga0207613_1014161F097964DALRRSRPDRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA
Ga0207613_101663Ga0207613_1016631F015492MAMRHRIWVFAAAILALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIHWKSKDGSQTTIMRGQGLRAFQTIGEFRIEAAGDDSRSF
Ga0207613_102092Ga0207613_1020921F014274IAVALLPQPSEAINVLTCEKAQPFDCTAPSVNVTIGVLQAAVAVADPSAAVISEAEGLQPRVTRAGVIIIVGGLGALSQVTVLVIVAELPQPSTAVNILVCEEEQLLVDIAPSVEVILTTLQPSVADAEPSAAVIADEAGLQPSGTSAYDPVNAGGIRSLVQLTVLVMVAVLPQ
Ga0207613_102353Ga0207613_1023531F041344MSARIVSAFLACTVVCFVGAQLTHAQEATSANLPDQFQTGEMIQIHKLKKKKTESSSQAVGTASEQDAPPVPEQTPAVEEMPAQIPPREEKKTEPN
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