| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026732 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072039 | Ga0207588 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19341892 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001196 | Metagenome / Metatranscriptome | 749 | Y |
| F005672 | Metagenome | 393 | Y |
| F062126 | Metagenome / Metatranscriptome | 131 | Y |
| F082881 | Metagenome / Metatranscriptome | 113 | Y |
| F084388 | Metagenome | 112 | N |
| F098176 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207588_100157 | Not Available | 1022 | Open in IMG/M |
| Ga0207588_100879 | All Organisms → cellular organisms → Bacteria | 699 | Open in IMG/M |
| Ga0207588_102162 | Not Available | 562 | Open in IMG/M |
| Ga0207588_102388 | Not Available | 547 | Open in IMG/M |
| Ga0207588_102526 | All Organisms → cellular organisms → Archaea | 539 | Open in IMG/M |
| Ga0207588_103145 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207588_100157 | Ga0207588_1001571 | F098176 | CALVASYRNTSEVTVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRAAMNELNTALEAITDADPIFAPQGLAVVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS |
| Ga0207588_100879 | Ga0207588_1008791 | F062126 | IVLRLRTGAAVTTRVTLSKDGSLVWLVAWLKKIPPGRTVSGNAVLDMLVENDAIGPTHFSYNERVRWFFLNSPVINQDLTPDRLRGEIDHVALIAARTEPLWDFERWR |
| Ga0207588_102162 | Ga0207588_1021622 | F005672 | NCGPWRLGTDCAHDTAPDLESAEPMTYPTHRLDHVSATAADWGLTQPKEHGEDERKRSLAAVATDLNGRLKQCCKSADSPSAAALEMRRHFTLFARYGLPNPKATQLVRDLTMKAFTSHK |
| Ga0207588_102388 | Ga0207588_1023881 | F001196 | GAFGLPWNAGRSTIEAKYAGGRWDQDDQGRQRYCAKSQQSLLKLAAQYKTRELCFLVGADGTLASATARFEPTLPSLLAVVNRSRTIFGDFDSIKRDEGSVQSRYTYMMWTRDRPYLVQVGSTNDANGRPNEVTFTVADDAALHTGGADAVSHRPVAQNH |
| Ga0207588_102526 | Ga0207588_1025261 | F084388 | VELKTVGKGAISCGNGEEVKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG |
| Ga0207588_103145 | Ga0207588_1031453 | F082881 | QDPRPKYWEHYLEFYRVLTQGGTDGLPHQFTEMFQRAYTRAREELRNRRRGE |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |