NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026709

3300026709: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-E (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026709 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091543 | Ga0207512
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-E (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14586602
Sequencing Scaffolds18
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium8
All Organisms → cellular organisms → Bacteria3
Not Available3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F000990Metagenome / Metatranscriptome811Y
F001033Metagenome / Metatranscriptome799Y
F001592Metagenome / Metatranscriptome667Y
F004992Metagenome / Metatranscriptome416Y
F007661Metagenome / Metatranscriptome347Y
F007830Metagenome344Y
F009574Metagenome / Metatranscriptome316Y
F020927Metagenome / Metatranscriptome221N
F029148Metagenome189Y
F031993Metagenome / Metatranscriptome181Y
F041476Metagenome160Y
F044132Metagenome / Metatranscriptome155Y
F051511Metagenome / Metatranscriptome144N
F056978Metagenome / Metatranscriptome137N
F057773Metagenome / Metatranscriptome136Y
F067572Metagenome / Metatranscriptome125Y
F068560Metagenome / Metatranscriptome124Y
F083187Metagenome / Metatranscriptome113Y
F105802Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207512_100077All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium1353Open in IMG/M
Ga0207512_100144All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1179Open in IMG/M
Ga0207512_100335All Organisms → cellular organisms → Bacteria949Open in IMG/M
Ga0207512_100497All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium867Open in IMG/M
Ga0207512_100719Not Available779Open in IMG/M
Ga0207512_100775All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium761Open in IMG/M
Ga0207512_100781Not Available759Open in IMG/M
Ga0207512_100856All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium737Open in IMG/M
Ga0207512_100957All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium716Open in IMG/M
Ga0207512_101043All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
Ga0207512_101127All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia680Open in IMG/M
Ga0207512_101336All Organisms → cellular organisms → Bacteria647Open in IMG/M
Ga0207512_101365All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium641Open in IMG/M
Ga0207512_101658All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium605Open in IMG/M
Ga0207512_101700Not Available601Open in IMG/M
Ga0207512_101759All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium595Open in IMG/M
Ga0207512_102075All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.563Open in IMG/M
Ga0207512_102166All Organisms → cellular organisms → Bacteria555Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207512_100077Ga0207512_1000773F056978MRRTLKRTKSKKQQGRVRDLKPVKEVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIAHLLEALQTLETWVPMSRTEIPQYAWAYRKFVDITTRLRQEARSR
Ga0207512_100144Ga0207512_1001442F000268MLMRVVAIMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYGDSTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGTSGVTFGFDKNGRMTFPDSFDR
Ga0207512_100335Ga0207512_1003353F068560IKMAINTLIGEGFTSSEIQEAVENRLVRIPGSHFPGNLCSASGKIGEPGEGTVVGPTYYLIIARARTLKWFRQVGGNY
Ga0207512_100497Ga0207512_1004971F007830LALAAVVYLIIFSNADLFKIGASTAIAAIPLLSWVLLKNKSSAHIVTKFEPWLYVSHAMQTLGLSHWLSGPLTFVVVALPIYLVGCLGLRVIGLPAILTAIFRPKSGGAVRFLLGIFVVIGVVIALTCSFTPEGWTFRYNPISSTFLVQSEYVAWIFAVEVFQAFYRWAISRGIYPAFAAGGIMATAAALSLPSTVQHFVIWRGPDQFFGSGKPFGRQLLSYDLQTLAAMDFLQADAHPGDVVLSVDNLNAPVLALTRCRVPVGYFSYGLVARSEYTRRETAERKFWN
Ga0207512_100719Ga0207512_1007191F020927MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLAGFAAVTYVVQHVKLKRAEHQRLLRKAEAAHQRALAAQARLERIDTAKSTLRGAATGAGRLVTDNVSIVANEALLMANETA
Ga0207512_100775Ga0207512_1007751F004992MEMSNETPAAIDPDMFAAVFSQNWDNARHIKSERISFMNAYSVVCAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLVKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTAGFITLIVYRLVTGEALK
Ga0207512_100781Ga0207512_1007811F105802IGHGGRKAELAGTFDPGSRVIRISKFDSGIDVLALARDMMPDAVGSLSAASTSGAWRVSGAGEIPVDQPENFRWNGDVALDGDLVYARGQTNIALQKPTFSVRVEEQVVTISDLKAGLWDGNLDVARLQVPLASKEKKLRIETQLTLNGARSSSVRKSFSAGQKQPRVVRLNWNGAWRMSAAGEIPVDHPENFRWHGEMALGGDFFYASGETKVALRQPTFSVREEKQVVSISAFKAGLWEGSFNAPKTLVY
Ga0207512_100856Ga0207512_1008561F031993MVVGLRAALRRPQVLLAKSVAAWRPACSQVEGASTEAEAEAEAGTVKAWKSIDQLS
Ga0207512_100957Ga0207512_1009571F051511LKFSRSLSDKHFASKAGKHYFTQRDHDKKHREAVTRKLEKIQGLVALLDTWEAQPENTVEYRKYLNNLRQKLHSARTQYKAMAI
Ga0207512_101043Ga0207512_1010431F044132VNRFGNENGQTTMKQGNSTLQFGGQQSFGQRYNTDNIFNPYARDGR
Ga0207512_101127Ga0207512_1011271F067572MRINNRLGGFSPRQTIEQFHQARLVRITHGRFAIWLDPFGMLNPEVVVNLLPKLDVSVDLMRLGRWLGERFMGGAGPFV
Ga0207512_101336Ga0207512_1013362F000990SSHTKCLTNRWNQLLAVVMSTFDFMKPFSMFAALGAASGGSAPSR
Ga0207512_101365Ga0207512_1013651F001592MTILEKTIRIAAIALAVLFIGLSLFGIFGAWFVDRKATDVALKGFGLIEVGIGVVDAGVGRVDDLIARSRTEVRQASETITAAGAQAQANSPVLNALNERLETSLAPRIAQMQQVLAPVRDAVGNVANAVSLLNSLPMMADRAPRLAALDETF
Ga0207512_101658Ga0207512_1016581F001033PLLKAPREDGSSFRADLEQSIPNERRFMNFVSRTKSMAVPHQILGASTNDKRELLVCGHSLIARLTIAVFVFQILGVTSVIHAERPDSTAGTSNAGTRKLFIGPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFS
Ga0207512_101700Ga0207512_1017002F083187NLIQPMIPEFVKGNEHEKPNRGQAALKILAEHIAQQLKERGFCVVFDGDLERCWPSSGMSQAERERKIQDFAESQGWTAAIQTGFATRAIFQKAEPSIDAESTTKSGPEMRSQ
Ga0207512_101759Ga0207512_1017592F041476MFMKSIWIGFIGVMLFVASASAASSVLQGIVKDAKGHSIEGADIRIEATNTGRLLTTVKTNVNGRYSLE
Ga0207512_102075Ga0207512_1020751F009574SLVVEQKSDIAPGTVAALKGLTQRIDTRLGEVHANVQAVRADVAALKDRLDKRQSRLLFVFNLLALLSTLMLAWILYTQVVVIRHHWARVRPPRPDRRPATTS
Ga0207512_102166Ga0207512_1021661F029148MSSLDWREIEIKYRGKPVKGRYNFSDNVVTVAAWNGTKAAQLGILPAERLAQMLLRELAAEGTG
Ga0207512_102379Ga0207512_1023792F007661VVLLIIVLALLGGAWWWLNSNKENSAKEGRDFANEAIQKIAVQHDGNFFISRLSPQMRMAFAAPTAQQEFMNEIVKLGAPVRPVDVQGKIEFNSQFFEPHGSFHSRIYY
Ga0207512_102482Ga0207512_1024821F057773MAVIGAGGGLVDPADVRTFVVEGGVRFGGQPVPDAMRLEVGLFFKKRPTERCEMLGTSPRRMASSAISRWLQWLIGRSLSDGFSHVIATTAHICSGVNVAGDPDRGASASRSTTDRLSSAVRHRLRQYRTIFGQTPSSRALACTPIASAACK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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