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Sample 3300026389
3300026389: Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.12 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300026389 Open in IMG/M GOLD Reference Gs0132855 | Gp0291465 | Ga0247507 Sample Name Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.12 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 55921905 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa Type Engineered Taxonomy Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: New York Coordinates Lat. (o ) 42.4447 Long. (o ) -76.485 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F022683 Metagenome / Metatranscriptome 213 N F031111 Metagenome / Metatranscriptome 183 N F080090 Metagenome / Metatranscriptome 115 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0247507_100959 All Organisms → cellular organisms → Bacteria 6969 Open in IMG/M Ga0247507_109085 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii 1299 Open in IMG/M Ga0247507_122263 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 594 Open in IMG/M Ga0247507_127063 Not Available 503 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0247507_100959 Ga0247507_1009595 F031111 MNNQVFFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEISKPLNLALIKLFKPKLTFP Ga0247507_109085 Ga0247507_1090851 F080090 YWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT Ga0247507_122263 Ga0247507_1222631 F022683 PLTDFYAKWSKDSLDMMSKGMAMYNRMSRAWTEVGEGSAAEKPEDMLKKWTEAFSGSYNELFEMYAQPFKMFGMGGQTPGKEAWEEAFAKWQKMFTAMPSGPAPAAGDEFMNFSKNWFEGYSKIWQTWMESMQRMGEACKSAVSEGEKPDAAMGAFTEISDRFMQQWSAFVTEQAQAFFTLWRSRLPSEKKEPAKKAK Ga0247507_127063 Ga0247507_1270631 F080090 MYWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
