NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026378

3300026378: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_D



Overview

Basic Information
IMG/M Taxon OID3300026378 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133410 | Gp0290882 | Ga0247712
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83692996
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_211
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum molischianum → Magnetospirillum molischianum DSM 1201
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → hill → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5788Long. (o)-110.8509Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000911Metagenome / Metatranscriptome840Y
F004067Metagenome / Metatranscriptome455Y
F016316Metagenome / Metatranscriptome248Y
F030702Metagenome / Metatranscriptome184Y
F032026Metagenome / Metatranscriptome181Y
F034496Metagenome174Y
F036883Metagenome / Metatranscriptome169Y
F042322Metagenome / Metatranscriptome158Y
F042587Metagenome / Metatranscriptome158Y
F058771Metagenome / Metatranscriptome134Y
F062529Metagenome / Metatranscriptome130Y
F064062Metagenome129Y
F066994Metagenome / Metatranscriptome126Y
F067309Metagenome125Y
F071487Metagenome / Metatranscriptome122Y
F079189Metagenome / Metatranscriptome116Y
F086772Metagenome / Metatranscriptome110Y
F091496Metagenome / Metatranscriptome107Y
F095925Metagenome105N
F101231Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247712_1000153All Organisms → cellular organisms → Bacteria → Proteobacteria6084Open in IMG/M
Ga0247712_1000873All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2707Open in IMG/M
Ga0247712_1001076All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2472Open in IMG/M
Ga0247712_1001135All Organisms → cellular organisms → Bacteria → Proteobacteria2422Open in IMG/M
Ga0247712_1001269All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2299Open in IMG/M
Ga0247712_1001365All Organisms → cellular organisms → Bacteria2231Open in IMG/M
Ga0247712_1001372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2226Open in IMG/M
Ga0247712_1007100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1064Open in IMG/M
Ga0247712_1012421All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21822Open in IMG/M
Ga0247712_1018558Not Available682Open in IMG/M
Ga0247712_1019703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium662Open in IMG/M
Ga0247712_1019724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria662Open in IMG/M
Ga0247712_1022278All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum molischianum → Magnetospirillum molischianum DSM 120625Open in IMG/M
Ga0247712_1023131All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium615Open in IMG/M
Ga0247712_1024629All Organisms → cellular organisms → Bacteria → Terrabacteria group598Open in IMG/M
Ga0247712_1025432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium590Open in IMG/M
Ga0247712_1027352All Organisms → cellular organisms → Bacteria570Open in IMG/M
Ga0247712_1029689Not Available549Open in IMG/M
Ga0247712_1029906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium547Open in IMG/M
Ga0247712_1036444Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247712_1000153Ga0247712_10001537F032026MFTVHVRWVDADKTRASFTLPGRLEWSAEHVSALIQMLSEIRAEMSPSVPVEPPPPYALEPLHDPRYATELHPFSGGTMLELRHPALGWFEFVLPSRERARMSALLAAQESQWRAHRR
Ga0247712_1000873Ga0247712_10008731F101231MRARAVLSALLAVGSMAWATAAQAQVPDRYGFFGHIDGRWMWLGGDQIKTWQGAAAPSTSGPGGQALLGFKMSAHWDIALAGDIQSLIAEVTKFRNGTLSVDTRHQHVDLELGYSEDWWRVSFGLRGIHYNQGAMYNVPGFAGYDQREMYGIGPKAGFGARLSLSDNWAVIGGADAALVYASFNDTGSGVLLNNGAYW
Ga0247712_1001076Ga0247712_10010764F064062MTRSQVRTFVEQSSTERIREVLDLLQKLKKHVPASERPQSEVPFLLDLRDHEAFFRELADAKLRR
Ga0247712_1001135Ga0247712_10011352F071487MTLTDVVTLAVPTMVFACGIALLSHRFFVVYKGWSMREFSYRSHVPGILGTASMLFAILSASSLGWAYAVLIVLVGFAVAYLYVYVFRMWVEAALLGPILAVLSILKPPRFWI
Ga0247712_1001269Ga0247712_10012692F095925VSGDTSYNEFVPLAMAAAVAYVRVVGPEERARPTAGLLDVVASALSVWVPIFGSRVPAAPRLRLADEEVARGRFCDGATRLCFRDGRPPVGNLAILHGDLDAGIRRLKRAGLRFSEAMVEPSPRRVPRILPRLPG
Ga0247712_1001365Ga0247712_10013652F036883MFVTSLKWNFDTEAIRGTPKTQGVFGLWDEGRLVYIGSTERNFFLPDALRELHALQQRGVIHATHFTWEITITPRSWAGELLRLHFSKHGALPLYNQPSSALQALRREGGPRDLR
Ga0247712_1001372Ga0247712_10013722F042587MLEPKRKESVYTRSLARAIEIAGGVEPLADFLGCSAGDVRRWTSGESHAPMPIFLAMVDILAANALTPVALENLPAARARLSRGRPAGGRPA
Ga0247712_1007100Ga0247712_10071001F062529MYSAPIMTTSQARETIDRLSEQTASLRRYGVAPDASIAEYNDSLMAFVPRDKMPLFYIGKGRYVGDTARPGAFVQGGLFRQLVERARTDFETLLLERRQQAPTR
Ga0247712_1012421Ga0247712_10124212F086772MSATTTRAWLYVKGPESIRIVIDGVSVAVYGPGPRFNHSHFGEEIDATLHQAAVEQSLVLDGWTLEQLTTERRSTPARPPRGAERRGAMRIVRDHGDR
Ga0247712_1018558Ga0247712_10185581F030702MTVLNSPVGRRQVLKGFLIAGPTLAIAGRLGFADGANAWPTKTDETPDVQDFTDIFVASQQPTVY
Ga0247712_1019703Ga0247712_10197031F058771DTHCMQRLYSRGESNLLESQAQDMWGAQALMMTMTQKTLQHVMTDPAVDTTLTMVADTVGLTKEMATTIVASGLPRMANVADGDPWVFKAMFAQSIKYLPQPAPAFYATLAKNAAARQALAAGFQLIFGPMTESIHRDTARHTNATAQQTSQVLAAIMPAAVKALGKANSNGNEMGFGRQLRNLNA
Ga0247712_1019724Ga0247712_10197241F016316VSRRVWLWLERGGGGYFLRDAATGEPVRWEDPRIRVVPAAGVSYRPE
Ga0247712_1022278Ga0247712_10222781F067309DPSMSAHIIGRPHDDLLDVLLGPGAEPEQAFIAGREEGPEEGGGGEDHPLGEEPTEADR
Ga0247712_1023131Ga0247712_10231311F079189VVRDRFWWFYGFRNLNSDNWVPGYYNTQSGLPEPLYTTLRNHATKLNYQLNPNNTLAYSAQYNSKALPNSGASAFVDSASTSLTDFPYWIQGVTYTSVLSNRSTLEIKWGEFGWRWWQRPGADEIAREDLDTRLVRGSRNAPFVDRSHHMNISGVYSLNTSGTRVGDHTLRIGYGYLYEGAPYQVLSPKDNLKTFWRGGFQRPV
Ga0247712_1024629Ga0247712_10246292F066994MTTTTTSAEFGDRVRSVLAEQPTSGVIDRFAANDLLLDLLDVAHSEVEEARVMQALADLPKSNLVDRTDLNTVLA
Ga0247712_1025432Ga0247712_10254322F091496MAREIDWQLFEKAVDLTAMALRGGMGGEGSQPPAFAAQVFTEVWGALKQAAGDLPEKPSAGFSA
Ga0247712_1027352Ga0247712_10273521F000911MSISMDRFASEGHFATYDAYKAAPQQVAVFQMQCRSCGFEPEDVVSVPRLCPKCHGESWERFARPGSILDNASRY
Ga0247712_1029689Ga0247712_10296891F034496VRQQLIRSSGCAWTEWRVPMPGDEQHSLEPPADDSPRPTLAPPWLALLTAWLGLTVLIASIVLIFLPGSRDPQAELERQLEYSIADRFLPFPIYGIALTLFLGIVVLWQMRREPRPLAEALVAQRVQAWVGVVLALGATVIIYAWVGLRGP
Ga0247712_1029906Ga0247712_10299061F004067MDVERPPICPACGVTMVPAALSEHARAGLDWVCLECEETEEPES
Ga0247712_1036444Ga0247712_10364441F042322VSELRSVVEQYRGEVLAELPDARVEEDFAELQRAGELLEVERLRRLLEIERRGVYTRDGHLSVAS
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