Sample 3300026365

Basic Information
IMG/M Taxon OID	3300026365 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131983 \| Gp0293667 \| Ga0255360
Sample Name	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300026365 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0131983 | Gp0293667 | Ga0255360

Sample Name

Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	93611526
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	24

Dataset Contents

Total Genome Size

93611526

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124

All Organisms → cellular organisms → Bacteria → Terrabacteria group

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Peatland Microbial Communities From Stordalen Mire, Sweden
Type	Environmental
Taxonomy	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Ecosystem Assignment (GOLD)

Name

Peatland Microbial Communities From Stordalen Mire, Sweden

Type

Environmental

Taxonomy

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → peatland → peat soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0466	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3533

Long. (^o)

19.0466

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004917	Metagenome	418	Y
F011470	Metagenome / Metatranscriptome	290	Y
F011711	Metagenome / Metatranscriptome	288	Y
F029308	Metagenome	188	Y
F032378	Metagenome / Metatranscriptome	180	Y
F035155	Metagenome	172	Y
F038045	Metagenome	166	N
F041155	Metagenome	160	Y
F043738	Metagenome	155	N
F051098	Metagenome	144	Y
F055369	Metagenome	138	Y
F056181	Metagenome	138	N
F061468	Metagenome / Metatranscriptome	131	Y
F067653	Metagenome / Metatranscriptome	125	Y
F070789	Metagenome / Metatranscriptome	122	Y
F078013	Metagenome	117	Y
F079367	Metagenome	116	Y
F085859	Metagenome	111	Y
F091193	Metagenome	107	N
F092956	Metagenome	107	Y
F094765	Metagenome / Metatranscriptome	105	N
F102351	Metagenome	101	Y
F103719	Metagenome	101	Y
F106196	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255360_1000324	Not Available	11040	Open in IMG/M
Ga0255360_1000835	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon PtaU1.Bin124	5409	Open in IMG/M
Ga0255360_1000982	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4865	Open in IMG/M
Ga0255360_1001387	Not Available	3806	Open in IMG/M
Ga0255360_1002257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2777	Open in IMG/M
Ga0255360_1002606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2539	Open in IMG/M
Ga0255360_1002865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	2380	Open in IMG/M
Ga0255360_1003055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2270	Open in IMG/M
Ga0255360_1006358	Not Available	1407	Open in IMG/M
Ga0255360_1007030	Not Available	1317	Open in IMG/M
Ga0255360_1007448	All Organisms → cellular organisms → Archaea → Euryarchaeota	1272	Open in IMG/M
Ga0255360_1010045	Not Available	1041	Open in IMG/M
Ga0255360_1011068	Not Available	979	Open in IMG/M
Ga0255360_1011658	Not Available	947	Open in IMG/M
Ga0255360_1011956	Not Available	932	Open in IMG/M
Ga0255360_1013236	Not Available	871	Open in IMG/M
Ga0255360_1014830	Not Available	810	Open in IMG/M
Ga0255360_1017053	Not Available	742	Open in IMG/M
Ga0255360_1017775	Not Available	723	Open in IMG/M
Ga0255360_1021779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	642	Open in IMG/M
Ga0255360_1022187	Not Available	636	Open in IMG/M
Ga0255360_1027890	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
Ga0255360_1027935	Not Available	560	Open in IMG/M
Ga0255360_1030803	Not Available	533	Open in IMG/M
Ga0255360_1032395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
Ga0255360_1033326	Not Available	513	Open in IMG/M
Ga0255360_1035055	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255360_1000324	Ga0255360_10003246	F056181	MEATDDLTSYRLRKRIHELEAENTRYQKNQNLARKWEFRITGVILLAIGVAITLLAYYSYNVSPIANVLLMVGIGALFVGAVTVFLNTERFISQKVAEDLNLSSVIVVDDLLRDLRVKNRGVYLPSSTTGTNVKVFIPLRREYEVPAKAHLTEDRAFLIDLANPAQEGVLLKPLGYHLFAHTTRDLKVDWRDAEAETEGAEDFQQDREQQDTLADKLQAVLVKGLELADKVVVSQSDGELNVRLHNTPYIGTCRSIGEEAPQVCEQIGCPLCSMIACIYTEYADTASVLEEARSEDNDIIIRCSGLARS
Ga0255360_1000835	Ga0255360_10008359	F078013	MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNAKQRALIWYSDTLYSASELLVIMPKVVPDYHEFDGSKTIQLLTSMYPEAYFLPGREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFDXAEKLXHVEANATPLL
Ga0255360_1000982	Ga0255360_10009821	F106196	MAEDDKQDESIKCTVTCPECGGEIVCSHEDAKHEGKHRCEKGH
Ga0255360_1001387	Ga0255360_10013871	F092956	MPSKVSRMHDSDDRMLARYQHLYKRALNVKALQLQKIQRAETRELCISALFKAVVICNNTLKEMDVKQYEAGPEQSLLEK
Ga0255360_1001387	Ga0255360_10013873	F085859	MTTQEREPKEPSFETGQEALIYEVERACGQLNKLKDLQLDEPFLRAVAADIRAHMDHLGASLQELTEPCG
Ga0255360_1002257	Ga0255360_10022571	F070789	VIYTLDTSGATKGRQATLRRPYQTIVLALMVGTSSIAVFDLYLFASSALH
Ga0255360_1002606	Ga0255360_10026063	F067653	MVLGPSSDQAGEDDATGLRGSAHWRLAVRGLRLAGLGLFVAVGGFVTRVWSTGTGLTILAVGVGIYLVGVVVVFTGFIPAIRALPKPRPSFWRLRWLLMRDALHAWHPDR
Ga0255360_1002865	Ga0255360_10028652	F035155	MRNEEPTRSSDPPPGFTGDLAADVGTSLGGMRAHPERRLEDPVEGRSGARRGQQLAAALSRESELAEGFADTRLVLLGDLGHVELRRLSGRPC
Ga0255360_1003055	Ga0255360_10030554	F055369	MTRKSRRSPVQRLKFYTTALLDGSITPEHIVEDWPDWCQLVPAFVASYGTEELRELEGGAEFLRVIEENEDVSLTEADRVYLKMLEE
Ga0255360_1006358	Ga0255360_10063582	F102351	VTRAESRDENAEWYPYFLIEPDPRCRECVTIMDWRSAHREIVITNGTEIKLTDYGWGGRHLHLRDERVAHHEIRVARERKERESKQHLHPVA
Ga0255360_1007030	Ga0255360_10070301	F038045	MIGFTPAEFNQVREAIAAAHLYCQAISPLLKARHTMMNKDQRQLAQFAPQAVAEGFNTIALITHRENRDPDAVDARPAIKLQDIDTEAMRDELENVSALVLPDLVYQMVCALGELPMYHELITAEPLTTHRAAILMAWTFEAGRRYGLQQALAIIDTTTTEFKTGTDAVLTAALNATLD
Ga0255360_1007448	Ga0255360_10074481	F078013	MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNVKQRALIWYSDTLYSASELLVIMPKVAPDYNEFDGSKTIQLLTSMYPEAYFLPSREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFDXAEKLXHVEANATPLL
Ga0255360_1010045	Ga0255360_10100451	F094765	MTTYQVTSDEDGHDLVASWPDLPERANHPVATFKELKLATAAKSVLNAASRYRWHRWIQLQDEGLFTDERVGADPTERPATAQLPAGSAGASGQPPWLPRLPTSAILGDSPMSDYLEARIEALIPGPGQESAPVEPDASGFTERVSIGNLRPLFWRDWCGHLQTGEHDRLAVELDAELAAMTGSLTGRARQISWYLSAELLIDEDRSRLVPIDKGDDGAEPAKVFQKSLVKLLSDLIGLRVESTAVDWDPDNEELLRVYSPKTVVGFWLDPECWYNGWPDPDSA
Ga0255360_1011068	Ga0255360_10110682	F079367	MKIPSLRGGIAGEKFRHKDDIVWWMKRYESLTTTEAEDIIRKAMAMLNDAVVLRDQALDLVAQLDQDINEAEDEITRLGGAAFIEKLEPMIEELKVYFDNLYE
Ga0255360_1011658	Ga0255360_10116582	F011470	MVHDGPVSDFCVTYLDSIDEQLLEYLDEDDKLKLDAVQRLRFYTSALLEGSISPEHVEDDWPDWYQLAPAFVATYGTEELQELEGASEFLEAIEEQNDVSLTDADRAYLKALEAWLDMYPEMRTTE
Ga0255360_1011956	Ga0255360_10119562	F061468	AEAAETSGGTVGDESLEAIRAELDALAERLGDAAYDSLRAQLHRGGKPSRSDPDLVREKLLSRARNAIERASLLVAQAERTAGEGAEEEESD
Ga0255360_1013236	Ga0255360_10132361	F085859	MTTQERKPKEPCFFTGQEALMYEVERACGQLNKLKELQLDEPFLRAVAAEIRAHMDHLGASLQDLTEPCG
Ga0255360_1014830	Ga0255360_10148301	F011470	MGHDGSVSDFLVTYLGAIDERLLDYLDEDDELKLDAVQRLRFYTSALLDGSIHPMHVMEDWFDWYALVPAFVATYGSDELRELETGAEFLGAIDEGEEVILTKADLAYLKELEAWIDMYPEMRTAEE
Ga0255360_1017053	Ga0255360_10170531	F051098	MIITPIYSCRNCKKTYPGAKQEIANGQLENFVRAARFTLGTQDHVFRIAGKTIQMSDLHQCNDHEVALANFIKIQVEKEEKKD
Ga0255360_1017775	Ga0255360_10177752	F011470	HDGPVNDFLVVYLDSIDEQLLEYLDEDDELKLDAVKRLRFYTSALLEGSISPDHVMEDRPDWYQLVPAFVATYGTEELQELEGAAVLLEAIEEQDDVSLTDADLAYLKALEALLGMYPEMRSSE
Ga0255360_1021779	Ga0255360_10217792	F103719	EHRIAYLSALSELGVLSHPVRTIYVACTQRVRFSTVSRRPLRLVLEKPETIHLEAEAVKNSWRSSLERALFECALRVDLVGGVERLAEAVASGSRDVDSARIARLATAFGTRGQAAQRRLASMATALQLPLTLSPEVGKQQQVIRLDPRDDRVAWTDTRLRVAWNTTIDELQAIVGN
Ga0255360_1022187	Ga0255360_10221872	F029308	FGQLSSNRHQPSYPYHRVMDDKEMDRVVKELLRLPSETAKHRAAISRIAAKRRELAGRLGEAIGPTKASQKLGVSRQTFWQILNPDQAKEIKKRSKTNTRGSSREP
Ga0255360_1026359	Ga0255360_10263591	F032378	DALRVWASSLLARKAVKYKFKLTAVALANKVARIVFALMTRGGEYDERSVAA
Ga0255360_1027890	Ga0255360_10278901	F041155	ESVEVGVHRGLRADGDIGTVGFGLSALLSLGTVNLVESII
Ga0255360_1027935	Ga0255360_10279351	F004917	RYTAARRRLGRAERDVTEAAEVSEAADAALSAQQSVRAVLGTDVRSALDRLEIVDSALATLRRREIAAWSSEPPEYVVALLGPRPTDQGRAQRWQQGTVEIEDWRRSLGITDGADSPNAWTRALGAPSEGWEGRRRRRVVANLVAVRRDLGLEETGRARAVNGGPLLDPATAAVLARGRSGESPSL
Ga0255360_1030803	Ga0255360_10308031	F043738	SWLSRMMLLTALVCFSVVTVMGLHAHVVIAPNLWVHHLGVGGAAGSLRHLIVMLTVGFIAVTLEAFVLCRDASARREPGAVATLLATARRLFRGARRGASVVVGSPALRPGSRVDRDADNGILRQLRSALSIAPVGPPTLLALGSDPRGLFGQSGHRAEVCAAP
Ga0255360_1032395	Ga0255360_10323951	F011711	MNDTRQKNQLQMVLALTGEGRSEAPRAPWEGTESC
Ga0255360_1033326	Ga0255360_10333261	F091193	QLRAGKKDKRTELSHSEPDLVIGANILKIITHSNGTKNLTANVKLKPTGQITIDILSLCLRGEKYEAKGSEKFEDKEQEQIKVTPITITNPKSCIVFFDVPGESAINSEDVKIYALANNREYYSGPFGIKFEASL
Ga0255360_1035055	Ga0255360_10350551	F004917	RNLQGPYTAARRRLVRAERDVTEAAELSEAADEALSAQQSVRAVLGTDVRSALDRLEIVDSALATLRRREIARWSSEPREYVVALLGPRPSDQGRAQRWQQGTVEIEDWRRSLGVTDGSDSPNAWTRALGAPSEGWEGRRRRRVVANLVAVRRDLGLEETGRARAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026365: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences