NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026363

3300026363: Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100



Overview

Basic Information
IMG/M Taxon OID3300026363 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131983 | Gp0293670 | Ga0255363
Sample NamePeat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size36055597
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota2
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatland Microbial Communities From Stordalen Mire, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002998Metagenome / Metatranscriptome514Y
F044388Metagenome154Y
F066284Metagenome / Metatranscriptome127Y
F076055Metagenome / Metatranscriptome118Y
F078013Metagenome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0255363_100002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia668653Open in IMG/M
Ga0255363_100003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria312346Open in IMG/M
Ga0255363_100008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria173888Open in IMG/M
Ga0255363_100180All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria13382Open in IMG/M
Ga0255363_101178All Organisms → cellular organisms → Archaea → Euryarchaeota2919Open in IMG/M
Ga0255363_102595All Organisms → cellular organisms → Archaea → Euryarchaeota1481Open in IMG/M
Ga0255363_104477All Organisms → cellular organisms → Bacteria → Acidobacteria986Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0255363_100002Ga0255363_10000214F076055MTHMTRTTVDVDRRALEAAQREFRTTGLSATMNAALCDAARRHMLKDFDVVRDIDGTPGEITAGREQRRRP
Ga0255363_100002Ga0255363_1000029F076055MMRMTRTTVDVDDRALEAAQRELRTTGLSATVNAALRDAARRHMLKDFDVVRDIDGTPGEVTTGREQS
Ga0255363_100003Ga0255363_10000367F044388MSHDPRVNIAWLRFEDYDPSVVISEEVDFGLRELGPADRHLVGLEYWQASKRLPSDLLAMLPAPPVGVTS
Ga0255363_100008Ga0255363_10000871F066284MRADYDSTANAISIVFSDMAVADASDELHPRAVVALRRGKPVELQVLYPDLGVAEPIAAAASRYELDREAIEAAAQSALAAPNRLVTVDVQPRVAA
Ga0255363_100180Ga0255363_1001809F044388VANVPSMRIDGHYDLKSDIAWLRFEDYDPSVVISEEADFGLRELDPANRHLVGLEYWQASKRLPSDLLAMLPAPSVGVAS
Ga0255363_101178Ga0255363_1011781F078013MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNAKQRALIWYSDTLYSASELLVIMPKVVPDYHEFDGSKTIQLLTSMYPEAYFLPGREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFDXAEKLXHVEANATPLLMEK
Ga0255363_102595Ga0255363_1025951F078013MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEEDSDYDRQERNVKQRALIWYSDTLYSASELLVIMPKVAPDYNEFDGSKTIQLLTSMYPEAYFLPSREYGVAIFIYPPNGTTALKKPNEIEMERLKANSYTIHVTQREGELIHVIELWFD
Ga0255363_104477Ga0255363_1044771F002998MSVSTNRVWRQLSNEIRVAVCQVFWAECKGPEKQFMIASLAKTKNLREVFVRKSSTERLVNWTAATLALPDPMVDDLLKRYLLHTHRAVIIHFLDLLNIPHSEGMIEEDFDYATLTTEGVQAAARSLLASPDHIGAELYLQY
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