NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026347

3300026347: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU4



Overview

Basic Information
IMG/M Taxon OID3300026347 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133548 | Gp0296342 | Ga0256809
Sample NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU4
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85039952
Sequencing Scaffolds29
Novel Protein Genes30
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F001196Metagenome / Metatranscriptome749Y
F002568Metagenome / Metatranscriptome547Y
F007558Metagenome / Metatranscriptome349Y
F007982Metagenome / Metatranscriptome341Y
F008086Metagenome / Metatranscriptome339Y
F016989Metagenome243Y
F018837Metagenome / Metatranscriptome233Y
F021565Metagenome / Metatranscriptome218Y
F022216Metagenome / Metatranscriptome215Y
F031953Metagenome / Metatranscriptome181Y
F033098Metagenome / Metatranscriptome178Y
F034003Metagenome176Y
F036766Metagenome / Metatranscriptome169Y
F045836Metagenome / Metatranscriptome152Y
F048395Metagenome148Y
F049078Metagenome / Metatranscriptome147Y
F050471Metagenome / Metatranscriptome145Y
F053087Metagenome141Y
F056714Metagenome137Y
F057161Metagenome136Y
F058543Metagenome135N
F066900Metagenome126Y
F076227Metagenome118Y
F090575Metagenome108Y
F092937Metagenome / Metatranscriptome107N
F097083Metagenome / Metatranscriptome104Y
F105454Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256809_1000008All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans6930Open in IMG/M
Ga0256809_1000542All Organisms → cellular organisms → Bacteria → Proteobacteria1918Open in IMG/M
Ga0256809_1000628All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1817Open in IMG/M
Ga0256809_1000945All Organisms → cellular organisms → Bacteria1578Open in IMG/M
Ga0256809_1001491All Organisms → cellular organisms → Bacteria1343Open in IMG/M
Ga0256809_1001612All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1303Open in IMG/M
Ga0256809_1002256All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1161Open in IMG/M
Ga0256809_1002366All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium1142Open in IMG/M
Ga0256809_1002534All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium1113Open in IMG/M
Ga0256809_1004001All Organisms → cellular organisms → Bacteria946Open in IMG/M
Ga0256809_1005235All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis861Open in IMG/M
Ga0256809_1006451All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia799Open in IMG/M
Ga0256809_1007764All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria751Open in IMG/M
Ga0256809_1008283All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium735Open in IMG/M
Ga0256809_1008705Not Available723Open in IMG/M
Ga0256809_1009133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi710Open in IMG/M
Ga0256809_1009630All Organisms → cellular organisms → Bacteria698Open in IMG/M
Ga0256809_1010623Not Available675Open in IMG/M
Ga0256809_1011004All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria667Open in IMG/M
Ga0256809_1015551All Organisms → cellular organisms → Bacteria595Open in IMG/M
Ga0256809_1016438All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium584Open in IMG/M
Ga0256809_1016664All Organisms → cellular organisms → Bacteria582Open in IMG/M
Ga0256809_1017166All Organisms → cellular organisms → Bacteria576Open in IMG/M
Ga0256809_1017427Not Available573Open in IMG/M
Ga0256809_1017643All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria572Open in IMG/M
Ga0256809_1021005All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria540Open in IMG/M
Ga0256809_1021516All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
Ga0256809_1024198Not Available516Open in IMG/M
Ga0256809_1025408All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256809_1000008Ga0256809_10000087F022216VNRDVSGRHATTGPTDEQRRRIRRSAMLLAAVALAIYVTFIASGMLGWRG
Ga0256809_1000542Ga0256809_10005422F021565VSIKYYAHFLVDEPDPRGLQEYRGVVELDGQPRRGGRELREAAHIIARNLGRQMREVKVLQWARLH
Ga0256809_1000628Ga0256809_10006282F000982MTSWKPSGRARQLLEHHRLRGRSYPTPVYWDRLYQMLVEEAERRGKTPPPPPLTYALDHVPTEADRIECLHEQVAWADRNNLLHRIQMFFDAMPPSAWNRLT
Ga0256809_1000683Ga0256809_10006832F105454VTNMSDTKDPAEPRGTPRKDDGQREPEPRRSRFGMASEGWEAYSTWLDRVRQQPGPVSRQAVIAKSLYSISSYKNWAGKARGAFDKPK
Ga0256809_1000945Ga0256809_10009453F090575SWTRRVLGASIAAPDGRGPIPDNRAVPEIVQGIERLFGAGSAAALIVQAVLLHQSLNVVPEWPNPASLTEEEVPHCIRPELLPLLEAVMLVDSDAWQLFDPPSKEKFRQCTLAVFADVRRRVAG
Ga0256809_1001491Ga0256809_10014913F007982MRPAARLTLSCLVLSLLAACGAPSPPQDEAEAREKGRDTDKTVFDDMIQTEDRARAVEGVVLGHKADLDATIEQQSEGATPPDEP
Ga0256809_1001612Ga0256809_10016123F036766MSNRSFASWIVDRPGPAVLVTGLLGLLPLLGLGFAFFLPGAVPALIVLMRGPRAGTLVAAGAVMLLALAVWFVGRPLPVGLIYAAWVLGPPLALAVLFQRTGSLSMSLQVAVLAGVVLLLLLHVTLGDPEQFWAPRVRDLATEMQRRG
Ga0256809_1002256Ga0256809_10022562F058543MEIVTISAKIYEKKKAEFFQTMESLTGLVEKQCHGLDIRVKDDHSLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN
Ga0256809_1002366Ga0256809_10023661F050471SPPSGSHYGYMAGNGGSSGPAATAARPDRLASAGERVMNGFHVHAIGWVLVANAYILTPAEARELTDLWTDLVRRRAADLRQAPLLLHLLFPRSLPLAPATRAALAKLVAHMVSQHPERFGDAALRQRRNHWAGQAMLGCLLSGLTALLLPIHWTWAAPVTPTFLLMGFGCLLPTVMLWRAAAAVHACNTGRFATHLVERLLHRFQVR
Ga0256809_1002534Ga0256809_10025342F048395MSIGELLVRQSDLRLHYLRRPPQAPGRLLKHVLHWGAWLNYLLSVVVLTAGITAGWRFAEIGFDLMMNNVSGQEVQQQIIKKIPAWILVYKGVKRW
Ga0256809_1004001Ga0256809_10040012F016989VSATGGSPFDEMLERSAGLQGIVDAMHSTHPLVREIADSTQIMQAQDEIREWYYTLPDAQRIPSTLQQKALDSMRDAVGAVRAHGTDEDVLQYAEFVLSTAHRVATAAREGDLFGVGGQLVSVGEQEFITKLKQLSQPQQR
Ga0256809_1005235Ga0256809_10052351F092937YRVAVTVEPMVRNCTCIGYLSEISDMGAPQINPKFTYDAQERVLRKADMMNATHLVWMGDYPFAAAAMIYRCGD
Ga0256809_1006451Ga0256809_10064511F053087MGLSTSVGMLKIKIWYGLDPGTGRWGCPMRQRWGLGPHQEMSPALEDKLAFTVTATGSYEEAATLAQKWNCPVDDSTLHALTRRLGRRAERQTQVRLESGVGELTPQRAASELAVFMLDGYLVRYRGPGWGKRRTQKKRVEWHEIKTGVFYLQEQAAQTEGGRGMLSEKVVVCWQG
Ga0256809_1007764Ga0256809_10077641F001196LSAIASGTLATLLASTAMAGPVGDQYRGGAFGLPWNASKSAIEGKYPGGKWQKDDKGRDRYCANSRQTLLKLPAQHQTRELCFMIGSDGTLASITARMDASLPSLLAVVNRSRTVFGDFDAVRRDESAIQSRSTAMLWTRDKPFVVQVSSTNDADGSPQEVLFTVADEAALYAEGTAQVSNKPPK
Ga0256809_1008283Ga0256809_10082831F066900MTQYQTLTEMLDHRSRGSLAIGYLEGENAEKSLPLSQLRRRALGILHHLQRLGAQPGDLLILHVAGNEPFLDA
Ga0256809_1008705Ga0256809_10087051F097083ATVRGTITYQAPPTPASMLYFISSEHWYVQEAPSGSPAATFELQVAPGTYQVVAFPVGSENLTNRPAAAYSTGTGLGALTVTAGQVLEGVHVQNINSDRCVTYAFPASPDGRFAPMEENCSKLTPETTPATVRGTITYQAPPTPTSMLYFISVEHWYSVEVPGGSSSSTFEIQVAPGTYQVVAFPVGSQNLTNRPAAAYTAGSGIDTLTVTAGQVVEGIHVQNINSDRCVNFAFPASPDG
Ga0256809_1009133Ga0256809_10091332F018837MPTIFDELRRNYGTASAEQKLHILRRELLRPIVTVDSSAQLLQNASDSICECLGEDVSADEFRNTVKWLTEAARDLHQILDALTENVSQVPDKHGVD
Ga0256809_1009630Ga0256809_10096302F034003MKKRRRRNHSLKKTNQLSFDFSTNDPIEIHTPKSDISELRKELAWEHRPIIEIVKS
Ga0256809_1010623Ga0256809_10106231F001196MSKFPLSALSAGVLATLMAGLATAGPVGDQFRGGAFGLPWNASKSAIEAKYPGGTWASDDKGRAQYCSASRQTLLKLPAPHQTKELCFVIGSDGTLASVTARMDASLPSLLAVVNRSRTIFGDFDAVQRDENAIQSRSTAMLWTREKPYVVQVSSTNDADGSPTAVNFTVADEASMYAEGAAKVSNKPVP
Ga0256809_1011004Ga0256809_10110041F007558MQAIADLKALALKMLEGAFQSGDVHATQQMGVSMTNAVKREGVVIIQNQNVEVFARIIPSMVKMLKLCDAIESNWRRQAAIELEPQQDQLPPPAGGEDTDPIEACCLWLYENHINWQDMQDLMKARYLDHVIGHFRKKSEAAKWL
Ga0256809_1015551Ga0256809_10155512F076227MLQELAARTGATFWAIASMIFFVGAWLAVAVWVWRTRPEQLEARARLALEGDEDWHDVLSDTQTER
Ga0256809_1016438Ga0256809_10164382F049078MKIHVKHSLKTDVASALKLCTELGNQEAIYARLGGTDVEIKREGRSPKVRLRISRKEAVNPPAAIRRLVPSTNHVSHTEAWSADGEGYCAD
Ga0256809_1016664Ga0256809_10166641F008086EAGGGDSVLIVADDPIALAQTARHLVDDVYQAPGRPLLRVALHSGAVRTRPQASGPAHQIVGGDAVLCAARVEPVVAPGEIWATEEFRQQLLERPSLWRTVALAPPEGGERFNVAKAGGAEGELWVRLYRLEM
Ga0256809_1017166Ga0256809_10171661F031953EDPLKQFRFTGWRATTRLEAQVAVPSVGFSWRSDPLNTSSASFGIIGEEVNGRYFTM
Ga0256809_1017427Ga0256809_10174271F045836FTALGYYIVSSFLDPVQWLICGICGWKMDRIDQAMIAGAAMVGLLFIILVFLYPEVKLFSFPSPHVGISILGRAIGAALMTALIFWLKQRQMNRKKSS
Ga0256809_1017643Ga0256809_10176431F007558TQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQVEVTVAPQHPQLPPPGDEGDTDPIEACCTWLYENHTKWQDMQDLMKARYLDYVIGRFKTKTGAARWLGVGSTYLCKLSKTATHAARRN
Ga0256809_1021005Ga0256809_10210051F056714TDPLSVFAATLQNTDSQAYELQIRQSGATDSSRYRIVENAQVEICFYGCEMTLLSTGQTVQVSPRDTVVIDSGVMNVTSGD
Ga0256809_1021516Ga0256809_10215161F033098AIREQIVKRGRYVASNLAFNAKYGVLTEDKPLLTQFLEGAVAPGGQGERSDVVGAMIRDAKGAVLAQTGKALRALPDAPAAELEEREALTTDGEPVLLFRAPVTTATGGDEAAAGAVRTEAVKGGVEVAISQGALRDVQLRRVFEALMLAAVVILVGFAIGWVVIGRWLKPLQSMALA
Ga0256809_1024198Ga0256809_10241982F002568MKNPPILISVIGFFAALAGFAWIFVGLRMLGFDWFGALGDLPAFEHVGLWGWLAIITGIVWLMAAFGLWSLQPWARIFAMIIAGFALFEAVLAFFQFPGTGIGFGMAI
Ga0256809_1025408Ga0256809_10254081F057161GAGAGSTVIVLDWVIVLLQASVNVQDSVTIPPQGPGSVPNVEVTDPLIRQAPLALLV
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