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Sample 3300026299
3300026299: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_9/17/2007_ DNA (SPAdes)
Overview
Basic Information
IMG/M Taxon OID 3300026299 Open in IMG/M GOLD Reference Gs0055735 | Gp0103134 | Ga0209570 Sample Name Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_9/17/2007_ DNA (SPAdes) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? Y Use Policy Open
Dataset Contents
Total Genome Size 297842407 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae 1 All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa Type Engineered Taxonomy Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
Location Information
Location Madison, Wisconsin, USA Coordinates Lat. (o ) 43.076217 Long. (o ) -89.411742 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F001089 Metagenome / Metatranscriptome 781 Y F002571 Metagenome / Metatranscriptome 547 Y F010709 Metagenome / Metatranscriptome 300 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0209570_1022066 All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae 1777 Open in IMG/M Ga0209570_1059941 All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 902 Open in IMG/M Ga0209570_1076476 All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 750 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0209570_1022066 Ga0209570_10220662 F001089 VTSAESDYLFRLAALSLTFVGFSSVVVTLQGRLGGELSDRHLRLVRLYIEGGFLVTALALVPTLLTFVQVPDRFVWPLSSAAAGAIFTLVLLIQFRRRRQVEPGRFPAWVIVIYVLSVAVVGALWLNVVGVPSPSRAGPYAVALTWALGVFGFIFVRTIELFLHRPPPGDSTGQEHTEKRGNR Ga0209570_1059941 Ga0209570_10599411 F010709 EVEAQIKAKEAELVAVGNRRRDSVAQVETDARRLREDFDRRSGAKREESDRKREALLASITALEKESAVEAKAIGVEFDQAVAKERATLDTRRPLDVVRRELDQARKTAEGYYEARLTEIGKTQVHRIATTVEIIRALFLGERPVSSTAGAKERGDILADQISMVRVWVYPVLAFIVAFLPTLMVEIGFSTLFREDKLRPPYRVGFLGRGLHRLYIRAGRRKILQAERLAHEAGIESADRARALAAKDAELRTVRETLVAAESRYDESGRKKESALRDDFRRKEEVLEGRLAEMSESLNR Ga0209570_1076476 Ga0209570_10764761 F002571 MNTPPETTSSGTFANQWRRFKSMEISYLTIPLLIMATIVEFVILATGFRYQRAVCVPDGMLVTFFGIGPFGAAILSVELLKLPLAIWTASRRGWLKLFMIVIGLPLICVLTFQLVKDMAVYEMTVAMHPAAELKAKAEEEEVKFK
