NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026231

3300026231: Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026231 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110167 | Gp0085196 | Ga0209546
Sample NameUpper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41306342
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae1
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria2
Not Available1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B171
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUpper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
TypeEnvironmental
TaxonomyEnvironmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Aerosol (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032247Metagenome / Metatranscriptome180Y
F032274Metagenome / Metatranscriptome180Y
F045749Metagenome / Metatranscriptome152Y
F049646Metagenome / Metatranscriptome146Y
F051069Metagenome / Metatranscriptome144N
F055725Metagenome / Metatranscriptome138Y
F077438Metagenome / Metatranscriptome117Y
F103354Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209546_1000134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae2180Open in IMG/M
Ga0209546_1000512All Organisms → Viruses → Predicted Viral1455Open in IMG/M
Ga0209546_1001246All Organisms → Viruses → Predicted Viral1114Open in IMG/M
Ga0209546_1001924All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage958Open in IMG/M
Ga0209546_1003080All Organisms → cellular organisms → Bacteria799Open in IMG/M
Ga0209546_1003276All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage779Open in IMG/M
Ga0209546_1004251Not Available706Open in IMG/M
Ga0209546_1006141All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17608Open in IMG/M
Ga0209546_1007647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli557Open in IMG/M
Ga0209546_1008115All Organisms → cellular organisms → Bacteria544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209546_1000134Ga0209546_10001343F032247MTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRDAERVDYTTGL
Ga0209546_1000512Ga0209546_10005121F032274MQGFFDFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDKT
Ga0209546_1001246Ga0209546_10012462F049646MTSKAQKPHYCKTDVISSCDCLVGFLSGEKVNKSTIDYEVERIVNIQPAFKKYGLLNGEPQTKRQIVDGRKGYLSRFVYCPYCGEKLNWKQVLSNCL
Ga0209546_1001924Ga0209546_10019241F045749IKGFLLKYNISDEFKASGRAPDTSSRQAMIQATISPEQCSVEDLINKHECSVVNGRILDVTWLNELCVIDGDMLPPTRTLGHILSDMGYSQIEGRRVKIQKTRENHYIWFKNVAGAASSDVIEQVRDFFKKGLDEVPF
Ga0209546_1003080Ga0209546_10030801F077438STHRVERSFTESRLETLFLWNLQVEISAALRSIVEKEISS
Ga0209546_1003276Ga0209546_10032761F045749TYLLTRAISEDFKASGRAPDTKSRQAMIQATISPEKCSVEDLINKHDCAVVNGRILDVTWLAKLCETEGEILPPTRTLGHILSDMGYQQIENRRVFVKKTDKRHYVWFKPSQKTDSDIAKNEVVDFFKKGLDEIPF
Ga0209546_1004251Ga0209546_10042511F055725MAFFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQNAFERYCWTRGL
Ga0209546_1006141Ga0209546_10061411F103354KESLSFASKPAGMAPNRQPIVENDDFVKRMQKIAGII
Ga0209546_1007647Ga0209546_10076471F051069VLAMAYRVSISSTELVTRAEVVAYAKIENTDENSIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPMIPITSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV
Ga0209546_1008115Ga0209546_10081151F032247MTVDDAIHDLEVYGHWMGSRYIAINFDKAHKEVLEKAVAVLDAAGMLERDPHPKWEGCNVRIINKPVPRVDYTTGLXYETV
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