| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025884 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0138766 | Ga0209206 |
| Sample Name | Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 557887446 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oklahoma, Zodletone Spring | |||||||
| Coordinates | Lat. (o) | 34.9956 | Long. (o) | -98.6889 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030484 | Metagenome / Metatranscriptome | 185 | Y |
| F066901 | Metagenome | 126 | Y |
| F083755 | Metagenome / Metatranscriptome | 112 | Y |
| F087715 | Metagenome / Metatranscriptome | 110 | Y |
| F092898 | Metagenome / Metatranscriptome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209206_10001586 | All Organisms → cellular organisms → Archaea → TACK group | 4461 | Open in IMG/M |
| Ga0209206_10101880 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 657 | Open in IMG/M |
| Ga0209206_10110792 | Not Available | 634 | Open in IMG/M |
| Ga0209206_10172376 | All Organisms → cellular organisms → Bacteria | 525 | Open in IMG/M |
| Ga0209206_10186682 | All Organisms → cellular organisms → Bacteria | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209206_10001586 | Ga0209206_100015866 | F030484 | MVDKKEEAIDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEEDLETSN |
| Ga0209206_10101880 | Ga0209206_101018802 | F087715 | TGAGEGLLSRCPEVIVVTEPPDWPLEQPAEGTLRPWYLTSHGFLVVLFRDPAEARRAEQGLLERQVPAEELRLYESEELQRNLSRLQQERSLLARAVAALVADPDAKRRFLDNARAGGAA |
| Ga0209206_10110792 | Ga0209206_101107922 | F066901 | MKHPCEPQLAWQICKLLSELDALLWELYWDEFETLYEKEEQDKYWGSTVLSEQEPF |
| Ga0209206_10172376 | Ga0209206_101723761 | F092898 | MLTNLNDVEFETRTIGPLVLTTPVLRKLGLREIVDRHCPIAEQADMGHGLVAELLVQ |
| Ga0209206_10186682 | Ga0209206_101866821 | F083755 | DSPQYVPQFEAFCEHARLATLLPLHEVIVIGDRKMPTVENQLAWLRLGVSYIGPVTMQETHRETLRELLKAGQTWRELPYVAQRDAKKQPHARTVYAGVSHTVPLTDPESGRQYPVRHLYIRSSALAKHAAQRRQAEMTAIEREIQRIQTLVNKYDYTTPAIIVQRVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |