NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025819

3300025819: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025819 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0147099 | Ga0209101
Sample NameHot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size407200295
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon1
All Organisms → cellular organisms → Bacteria3
Not Available6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA62

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)37.4127Long. (o)-118.504Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007154Metagenome / Metatranscriptome357Y
F009590Metagenome / Metatranscriptome315Y
F014385Metagenome / Metatranscriptome263Y
F028182Metagenome / Metatranscriptome192N
F029273Metagenome / Metatranscriptome189Y
F043425Metagenome / Metatranscriptome156Y
F043791Metagenome / Metatranscriptome155N
F050401Metagenome / Metatranscriptome145N
F051992Metagenome / Metatranscriptome143Y
F080093Metagenome / Metatranscriptome115N
F080998Metagenome / Metatranscriptome114N
F096395Metagenome / Metatranscriptome104Y
F098762Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209101_1014721All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon3249Open in IMG/M
Ga0209101_1049395All Organisms → cellular organisms → Bacteria1334Open in IMG/M
Ga0209101_1051510Not Available1292Open in IMG/M
Ga0209101_1063463Not Available1106Open in IMG/M
Ga0209101_1065674All Organisms → cellular organisms → Bacteria1077Open in IMG/M
Ga0209101_1071442All Organisms → cellular organisms → Bacteria1012Open in IMG/M
Ga0209101_1078509Not Available941Open in IMG/M
Ga0209101_1088547All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6860Open in IMG/M
Ga0209101_1119956Not Available686Open in IMG/M
Ga0209101_1120684All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6683Open in IMG/M
Ga0209101_1161231Not Available553Open in IMG/M
Ga0209101_1176456Not Available518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209101_1014721Ga0209101_10147213F029273MQLDDILELLQETPKRASRATISRQTKIDKATGLLSSIEARKKKDPLYKLMIMYRDKYFHYRDMIHKKYSPRVRTKARR
Ga0209101_1049395Ga0209101_10493953F028182MPKVSISEAARRLETTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAAPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP
Ga0209101_1051510Ga0209101_10515101F096395LTNERITELINIIESRQSHYSELRAIAAGALPSIWSDWRHYEPAGSIASDICAVLEASLVGRVDLRVDPDDAVADQLITVLYTKHLHPLIREAVRDYIVCGWGGIAITPFGPTRLKPEHSVAGKSWYLRRFELDAKTARQRYGKRRVFDGRDGNVLLIETLENNKLQVRFGDTIVFSKDWDYEPRLLVGDERPRLVDNSLHGAPIGIIEQCKDLFIDHHVVRTMITRRAAMAGLVQVIASQLDDPQSADNIAKRWDTVLVRDGAAVFPLDQRSLGELMTIQQQIEQSISARSGVSLFQRGISDPHIQTATEAALIQNQNNTRLVYLQSLVRDWLNECVADYRRYLVNLPEDQLEYIEFPSNGSTEYFGAGRHYSEALAGRQVYVALSGYRDLAQRQQEVMSLLPVLQSSGANTKPLLEELIRLSGRD
Ga0209101_1063463Ga0209101_10634632F050401MKWLTRMFTLPKRYNSLSDVMRDPLGAITNAAQWAVPLAMGLPGGFKALPKLITNPALIGKWSLGNAPAFFGVAGKSGGWDLSKVNAWLKKPENIAMVAGGLSYLDQSRRARNASNALNAYRQQMGGLGELERMFNTGLMQRRLTALDSVLSPAFPIAQLRAMEDDTAKRTRRMMDTAGVLSLRTAEDALTRTAGELSRQRALIPLQYAQAVMGIPMGGQYTGLVANLLGQQQAQELMAMQQLIPALLQLYAYTRGIQNVQPPTVG
Ga0209101_1065674Ga0209101_10656742F043425MRQELSPKVTWVLVGLAVLLAAGLVWWFLIGSDPAARAEVETIPPGYNPITGQQLSPPSESR
Ga0209101_1071442Ga0209101_10714423F014385MPTPILTPEPSDWWEELQRALVRSALEQLTPEEEHALWLYAEGARLTKQQHALAEATLAKVRRMLRLEP
Ga0209101_1075640Ga0209101_10756402F080093MRIADRPQPRVRLRALPQPYALAAHSLREQLYHPLVQSVLHILRELVASGGARLVGDAPDEERELFTRVIRTQGFTLAVRHLATAHVAGAAVVEILWSDDFMPHALRPAPPEAVQFGVDEHGEIVNVRLTTSAGMQELPLTHAVIVDASPAWRIYGVRELPVHALTR
Ga0209101_1078509Ga0209101_10785091F098762MIRIQYPSSVDRVAYPVLSENIDYSAVDGSIRAWYPFTRVQSTAVVYGMGVWRDQFYYVAGDKFYRYPFTQLGVLDSEPQITERAYFVPLSDVLVIIVSGAIYLYDTQNGFRKWTKPSKPTTVPNTERVLFSVNRGTNLGGSATFTDGTNDYTLGDVADGEPGAHRWFGLDLPANPNDRPAWVSEVIFRLNSWQNTISTREHSAVELHSDQTGNNQIARVVLPYPYTMGDHSIV
Ga0209101_1088547Ga0209101_10885472F051992LEERVESSRSRLNCRGVKRKMSNYNLRPRKRHRTRRIDPAKRIRIVK
Ga0209101_1119956Ga0209101_11199561F080998IRLSNPYTIVTSSDPTLLQQVIVPQALYMRSDDVPSEFRVASALTLFFVLRDDPANTLMAVQLRSHGASLLNRAYNDWVRTAAKLGNQFLRVPLDARALPVKFGAGEQVMVGRAQKSPIAAPTFKPLRQYKSADELQADLVPPERFEELRRIAEDDLLKQYPAIPTVKIAPTIDAAYVALGDALRDEHAKALPAARPASKVIEQGDYF
Ga0209101_1120684Ga0209101_11206841F007154VASGAGIRLPAGASHRMNSVLGQWRESKVRPIPGNAPHDRPVSRGMISPSSIGDDAFRTTRFPPHSGILPGPSVGVFKAWRNLSGPMGYQNQTLARDPTASRRSAPSQGQRTRREDRAPSHRPQMSSGRLFLDRVGRHQSPSPLHRQPEHNTHSSGGQAKGDISTLPERGHFYFALTAPIRGLTS
Ga0209101_1161231Ga0209101_11612312F043791IEMFEQVVISGLAAVYFTFIFTAKRGPFDLFAKIRAAVKPIPFLGYHLSCPTCLSLSSGAVFFALTHTPLAVLVDVLAVAGIVLALHGMAGYWHSKDD
Ga0209101_1176456Ga0209101_11764561F009590MHVHSGVTGRVLAGPTPPPGQGWRLEVNLARGCYRWTRRYGAKRQWTAYRPLAELPAERIAAAKAESERQKVLRMR
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