Sample 3300025765

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025765

3300025765: Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025765 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0134299 \| Ga0209708
Sample Name	Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44988848
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → cave → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Devils Hole, Nevada
Coordinates	Lat. (^o)	36.43	Long. (^o)	-116.29	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026254	Metagenome	198	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209708_100063	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	42519	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209708_100063	Ga0209708_1000634	F026254	MNTVIQFSVSEETKALPILLRHSRGTILPDRTYVVTEDAARALRQAGIRFSVLSRESVAPSIQGAGSSERV

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