Sample 3300025752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025752

3300025752: Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025752 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054439 \| Ga0207912
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	2864171
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Balearic Sea, Spain
Coordinates	Lat. (^o)	40.83194	Long. (^o)	2.44806	Alt. (m)	N/A	Depth (m)	1500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093912	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207912_100338	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	696	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207912_100338	Ga0207912_1003381	F093912	YSAGMFNLQKTQKVRQPKAIITILKALLVKIKIFRTKPVALHFNNLFFNHQSYVFKKLKKKVFVKLVTSYNYHPHNGCRLKKKKRIKIRTRTRKL

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