| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025717 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067861 | Gp0054089 | Ga0207419 |
| Sample Name | Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 512009680 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Elkhorn Slough, Monterey Bay, California, USA | |||||||
| Coordinates | Lat. (o) | 36.83 | Long. (o) | -121.785 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F011397 | Metagenome / Metatranscriptome | 291 | Y |
| F015419 | Metagenome / Metatranscriptome | 255 | Y |
| F034932 | Metagenome / Metatranscriptome | 173 | Y |
| F036294 | Metagenome / Metatranscriptome | 170 | Y |
| F062769 | Metagenome / Metatranscriptome | 130 | Y |
| F082762 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207419_1027338 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2157 | Open in IMG/M |
| Ga0207419_1045289 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae | 1550 | Open in IMG/M |
| Ga0207419_1097158 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae | 928 | Open in IMG/M |
| Ga0207419_1114321 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens | 832 | Open in IMG/M |
| Ga0207419_1137098 | Not Available | 734 | Open in IMG/M |
| Ga0207419_1157290 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 668 | Open in IMG/M |
| Ga0207419_1182497 | Not Available | 604 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207419_1027338 | Ga0207419_10273382 | F036294 | MDRGSSDEAIVGVKPTADDDAVTYRRGKLLESDKEVGAEGRNM |
| Ga0207419_1045289 | Ga0207419_10452892 | F062769 | MTDLDAFSNWLTSATRAAILAVRARVYLAREQHPAWRSATNTILKRITQELAARGEYDRRCVA |
| Ga0207419_1097158 | Ga0207419_10971582 | F034932 | MRTVRIESESHNLIAGFVAGIEWVNDSAVAVVDLQYCGRTAFVVLEDRDGSGEDAVLRLTSDGLADEE |
| Ga0207419_1114321 | Ga0207419_11143212 | F001506 | MNRILYEIRCKCKENISITKKRKSTSRTEGKRLVYPKSNELTSKSFQIEYEKKLSSVAKCLLNSFQHKYFYYAVDDILYLCKSNAKERENLLAILYSPVILLQNNLFINFFDIWIQEIYITEVLKSNKFLKTTDSNVESFHSITIKLLYRTKTPVKQQESLW |
| Ga0207419_1137098 | Ga0207419_11370984 | F011397 | FDRICDGYVYICDNTSVEERKEWRINLKDLQKTIKKGEKYIYQVAKDSGMFKAMCLSFNNYRIIRKHIFGIDDE |
| Ga0207419_1157290 | Ga0207419_11572901 | F015419 | MKYELKITDEQGNEHLYNVVRSSSDEPKNLNDFILEALSISEYKRQLPFLTQCPNGLEVHPSIKMKFKDYGSSLVGDKLEAMMVTWRCLVLK |
| Ga0207419_1182497 | Ga0207419_11824971 | F082762 | MLGLFTESLTYLFPGGRTLKLIKNGVSVTNSSNPVVLAKNITLTVVDCCAPPPLRLAAHCIAAGATIAASIAAPNPVTLGSAVHLVTELYENC |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |