NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025586

3300025586: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025586 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0116306 | Ga0207996
Sample NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size338938472
Sequencing Scaffolds30
Novel Protein Genes32
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Atribacterota1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P051
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforapulum → Desulforapulum autotrophicum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G111
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010230Metagenome306Y
F026446Metagenome / Metatranscriptome198Y
F027599Metagenome / Metatranscriptome194Y
F031722Metagenome181N
F039448Metagenome / Metatranscriptome163Y
F042665Metagenome157N
F048391Metagenome / Metatranscriptome148Y
F060609Metagenome / Metatranscriptome132Y
F063346Metagenome129N
F067269Metagenome125N
F067270Metagenome125Y
F069498Metagenome124Y
F069520Metagenome123Y
F075591Metagenome / Metatranscriptome118Y
F075727Metagenome118Y
F077964Metagenome117Y
F081868Metagenome114Y
F089824Metagenome108N
F091299Metagenome107Y
F092080Metagenome107Y
F096357Metagenome104N
F102143Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207996_1002179All Organisms → cellular organisms → Bacteria → Atribacterota12325Open in IMG/M
Ga0207996_1003439All Organisms → cellular organisms → Bacteria8558Open in IMG/M
Ga0207996_1004714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6791Open in IMG/M
Ga0207996_1006089All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P055591Open in IMG/M
Ga0207996_1008135Not Available4439Open in IMG/M
Ga0207996_1012796All Organisms → cellular organisms → Bacteria3137Open in IMG/M
Ga0207996_1013154Not Available3070Open in IMG/M
Ga0207996_1017834Not Available2418Open in IMG/M
Ga0207996_1018807Not Available2323Open in IMG/M
Ga0207996_1029052All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulforapulum → Desulforapulum autotrophicum1685Open in IMG/M
Ga0207996_1031896All Organisms → cellular organisms → Bacteria1575Open in IMG/M
Ga0207996_1039604All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1341Open in IMG/M
Ga0207996_1040745All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1315Open in IMG/M
Ga0207996_1050828All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G111121Open in IMG/M
Ga0207996_1052945Not Available1087Open in IMG/M
Ga0207996_1057315Not Available1026Open in IMG/M
Ga0207996_1060682All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter985Open in IMG/M
Ga0207996_1062868All Organisms → cellular organisms → Bacteria960Open in IMG/M
Ga0207996_1064774All Organisms → cellular organisms → Bacteria940Open in IMG/M
Ga0207996_1070931All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → unclassified Alteromonadaceae → Alteromonadaceae bacterium881Open in IMG/M
Ga0207996_1082968Not Available787Open in IMG/M
Ga0207996_1087888Not Available754Open in IMG/M
Ga0207996_1094565Not Available716Open in IMG/M
Ga0207996_1094738All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales715Open in IMG/M
Ga0207996_1101817All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria679Open in IMG/M
Ga0207996_1105668Not Available661Open in IMG/M
Ga0207996_1119869Not Available604Open in IMG/M
Ga0207996_1121314Not Available599Open in IMG/M
Ga0207996_1123687Not Available590Open in IMG/M
Ga0207996_1138099Not Available544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207996_1002179Ga0207996_10021792F081868MTDKQKTKKLPLAKGNSYGVSTAIWNNTNKAGTKYQSISLSASTKQTDRSYKNRTIFFPSDLENLIAALTELKANADAEGIQTGFVEKK
Ga0207996_1003439Ga0207996_10034398F075591MQDLAKLSELAEAEIETLRADGIDLTPAEIVEINALGHAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCQLDGNKQQTFALAYAMAHGRDAGEPLAMEGRDAEKTVKRWGKSLKCTFGELNVAVSQVLAQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCASGYTHAVLDCLCRQNSADGKKTMADPRIRAERALGWAVEKIKRDRAKIAGQT
Ga0207996_1004714Ga0207996_10047141F067269MIKSHTGSYTCALERQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRKRYRGYDIVYTRRKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMFDEWIDNNN
Ga0207996_1006089Ga0207996_10060895F026446MKVTGETFSFTKEEKEPKRKDVINIKLAGKRTVTRQNSGELYTKKHRRGNS
Ga0207996_1008135Ga0207996_10081354F069520MAEIDPQVFGGLIADVKTLMKQTEQSRDDQTVANNILFAKIDNLSANGCVQGEGLRIRIKTLEEKPAKLVAIGSMIIAGIVAIGGACVWLYEKFKALQP
Ga0207996_1012796Ga0207996_10127963F060609MNELEKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGASDAYAANTGAGSFSLKGDSN
Ga0207996_1013154Ga0207996_10131543F060609MNELQKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYKKPAIRSFFGASDAYAASTTTAGKFTLKGDSN
Ga0207996_1013266Ga0207996_10132665F102143VKLVSKSIKIDPELWHEARVKAMAERMTLQELIAKLLTEYLKNKGR
Ga0207996_1017834Ga0207996_10178346F075727MNKINKKGWVARDFIIAMLMFSGVLAIWVLMIGSVANDYGNTDVIDPEFSEKFDKFSEETDRAGEMWEAATSEGGLSLVGAADLLFFSTFKVISLVFNSVVAAGQQMAGFGEFFGIPSEISTIFSVLFFTILTVSIVFIIISSVRSGREL
Ga0207996_1018807Ga0207996_10188073F091299MKEEKEKDKLENITGSGIEVTIKGKEYKLGIFGMRDLADFRQYVKGQRIKIIQATIVSMEEKLILINSILDSNVNETKELQTMDGVTFMLWRSLKKYQPELTLADVDDMIDLDNISEISNVLMNIGGKVKNSQKRAKKV
Ga0207996_1029052Ga0207996_10290523F092080MQDKRITIRIPFEIWKDLRELQTVGKISSIQQAAVTGMNKLIESLKWGEEEMRDTLRGVSKKRVLDCLVREKPLGNWEDVHGERTDADADRS
Ga0207996_1031896Ga0207996_10318962F063346MNVEHRIMYSTIYNIDKATRPPRLSEQIKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKSSYHVEITYTGQEF
Ga0207996_1039604Ga0207996_10396042F027599VVKLVPVPNKEPPVDAAYQLMVPAEAVAPRFTVPDPQLEPGAVPVMVGTGFMVAVTAVLVAVIQPPFVAST
Ga0207996_1039604Ga0207996_10396043F027599MVGVVKLVPVPNEEPPVEDAYQLMVPTEAVAPRSTVPVPILEPGVVLVIVGIEFIAAVMAVLLDVVHPLFVAST
Ga0207996_1040745Ga0207996_10407452F063346MNVEHRTSNVEHRIMYFTIYNKDKATRPPRLSEPTKGRRTLSTARDGGQERLPHSTFLPRETFFLFHWGDVERSMFDVQIVASEITTKPSYHVEIMYTG
Ga0207996_1050828Ga0207996_10508282F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSGWFLCYQEDLAQAESERLRAARKRNPSLICAAALVVASVTGKLSEEQKNMAFYFTRYVEAHEYELDQLVRRSTGSHNSAEIRKEEAAERMETAFSLWLKLDKPERDKCAIIAKRMGCKVDTVREWRRKGWRSG
Ga0207996_1052945Ga0207996_10529452F039448MKVNQAIELAMAKTLRKYAQMGEDVTVRAWRSLEADGSWKENPDRKFPMIDVRCSVPKPDDNESTLQVECAILMGTNTDDDKSHAFIVGMEDAVQDVCDTLFSQYKTEVFTGEELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRS
Ga0207996_1057315Ga0207996_10573152F069498THGVIEVDAFDEMFGKPDEEPEPDNPEMSLEQLMGGGEDD
Ga0207996_1060682Ga0207996_10606822F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWFLCYQEDLAQAESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIGKRMGYKANTVREWRRKGWRSG
Ga0207996_1062868Ga0207996_10628682F069498EKHGVIEVDAFDEMFGKPDEEPEPDNPEMNLEQLLGGGEDDYD
Ga0207996_1064774Ga0207996_10647741F092080MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMDKLIESLKKGVKENRKEAAKNRVLNVLVKERPLGNWEDTHRERMEADADRS
Ga0207996_1070931Ga0207996_10709312F096357HPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0207996_1082968Ga0207996_10829682F031722MKKDETATTQTPTPTQKVTKPSFYPEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0207996_1087888Ga0207996_10878882F077964TMKKLITITAILFLLSPAVAFCQTAESKTSPPTIQKIAPNVYYYNYNITEVQKEPEGGGEAETFYQYNYVRIQGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKNALKKLYKTVLAMLKQMDLSE
Ga0207996_1094565Ga0207996_10945651F060609SRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0207996_1094738Ga0207996_10947381F048391MNDSKSVEPINTLDYLEELLGKGYVIKGPRKDPSRDLISFKAFLKKGKEFAPEGWLSHMGYEFIEPSTFTKGHKIAYKIIDEFPDERFNSNYTLVKGNREIPLYLKVAVLKAE
Ga0207996_1101817Ga0207996_11018172F060609MNELPKSDAVSVGRREFCRKAIRGSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0207996_1105668Ga0207996_11056681F060609MNELKKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAVRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0207996_1119869Ga0207996_11198692F089824MFTNLSPEEATIAYIIRAYKSFDNTITQYDIADEYIIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERVECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQEEMF
Ga0207996_1121314Ga0207996_11213141F042665RPKTMTSPKMSFATLIMLSSVVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK
Ga0207996_1123687Ga0207996_11236871F010230AKAVHSPHAFTNVVALLVTINGNELRLVQPRQVELKPVPLLILINGNELRLVQSRQVESKLVPLLVFINGNELRLVQFRQVWAKLVPLLVFINGNELRLLQPRQVKLKIVPSLVLINGNELRLLQPSQVKLKSVPLLVSINGNELRLLQLIQAKRKLVPLLVIINGNEVRLLQFCQVEPKSVPLLVLINGNEVRLL
Ga0207996_1138099Ga0207996_11380992F067270DEVKHFDKELISILELPNVKSLRDRIKKDKRDTEEMLNLYYRMGKVNKLIKLVKSEMRKCNDRAMALLGHRLQRVTRKYDRHRDTSYDL
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