Sample 3300025562

3300025562: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025562 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101345 \| Ga0210099
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	211413657
Sequencing Scaffolds	42
Novel Protein Genes	42
Associated Families	42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria	3
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.197227	Long. (^o)	-122.010124	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F001012	Metagenome / Metatranscriptome	806	Y
F001115	Metagenome / Metatranscriptome	774	Y
F001421	Metagenome / Metatranscriptome	698	Y
F005815	Metagenome / Metatranscriptome	389	Y
F006247	Metagenome / Metatranscriptome	378	Y
F010065	Metagenome	309	Y
F015489	Metagenome / Metatranscriptome	254	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F018371	Metagenome / Metatranscriptome	235	Y
F018997	Metagenome / Metatranscriptome	232	Y
F023130	Metagenome / Metatranscriptome	211	Y
F028610	Metagenome / Metatranscriptome	191	Y
F029006	Metagenome	189	Y
F029036	Metagenome	189	N
F034932	Metagenome / Metatranscriptome	173	Y
F034962	Metagenome / Metatranscriptome	173	Y
F038641	Metagenome / Metatranscriptome	165	Y
F040163	Metagenome	162	Y
F045104	Metagenome / Metatranscriptome	153	Y
F049731	Metagenome / Metatranscriptome	146	Y
F052687	Metagenome	142	Y
F055239	Metagenome / Metatranscriptome	139	Y
F064823	Metagenome / Metatranscriptome	128	Y
F066187	Metagenome	127	Y
F068995	Metagenome	124	Y
F071802	Metagenome / Metatranscriptome	122	N
F075847	Metagenome / Metatranscriptome	118	Y
F075999	Metagenome	118	Y
F076224	Metagenome	118	Y
F076659	Metagenome	118	Y
F077207	Metagenome	117	Y
F077453	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F079741	Metagenome	115	Y
F084125	Metagenome	112	Y
F085105	Metagenome	111	Y
F085179	Metagenome / Metatranscriptome	111	Y
F091050	Metagenome / Metatranscriptome	108	Y
F096270	Metagenome / Metatranscriptome	105	N
F101240	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210099_1000402	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	14967	Open in IMG/M
Ga0210099_1001659	All Organisms → cellular organisms → Bacteria	5048	Open in IMG/M
Ga0210099_1003867	Not Available	2901	Open in IMG/M
Ga0210099_1011946	All Organisms → cellular organisms → Bacteria → Proteobacteria	1597	Open in IMG/M
Ga0210099_1012133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1585	Open in IMG/M
Ga0210099_1013184	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1524	Open in IMG/M
Ga0210099_1013985	Not Available	1480	Open in IMG/M
Ga0210099_1014734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1444	Open in IMG/M
Ga0210099_1018986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1279	Open in IMG/M
Ga0210099_1019641	Not Available	1259	Open in IMG/M
Ga0210099_1021338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1210	Open in IMG/M
Ga0210099_1023633	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1155	Open in IMG/M
Ga0210099_1025986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1106	Open in IMG/M
Ga0210099_1029622	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1041	Open in IMG/M
Ga0210099_1029749	Not Available	1039	Open in IMG/M
Ga0210099_1030031	Not Available	1034	Open in IMG/M
Ga0210099_1033607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	981	Open in IMG/M
Ga0210099_1035341	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	958	Open in IMG/M
Ga0210099_1036085	Not Available	949	Open in IMG/M
Ga0210099_1051202	Not Available	806	Open in IMG/M
Ga0210099_1052794	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
Ga0210099_1053611	Not Available	789	Open in IMG/M
Ga0210099_1056826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	768	Open in IMG/M
Ga0210099_1057515	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
Ga0210099_1058252	All Organisms → cellular organisms → Bacteria → FCB group	759	Open in IMG/M
Ga0210099_1064866	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
Ga0210099_1066771	Not Available	712	Open in IMG/M
Ga0210099_1068619	Not Available	702	Open in IMG/M
Ga0210099_1071789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
Ga0210099_1074195	Not Available	677	Open in IMG/M
Ga0210099_1079270	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	656	Open in IMG/M
Ga0210099_1083641	Not Available	639	Open in IMG/M
Ga0210099_1087322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
Ga0210099_1093959	Not Available	603	Open in IMG/M
Ga0210099_1106020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	567	Open in IMG/M
Ga0210099_1109778	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
Ga0210099_1114799	Not Available	544	Open in IMG/M
Ga0210099_1115092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	543	Open in IMG/M
Ga0210099_1117815	Not Available	537	Open in IMG/M
Ga0210099_1126259	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
Ga0210099_1129331	Not Available	510	Open in IMG/M
Ga0210099_1131121	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	507	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210099_1000402	Ga0210099_10004026	F085179	MRILNPKRRKAKSSRKIATFLLLAYFAMGAGLVDSSVLCLGEDGHLAMESAVSCSPCGVRAILPVQPESLGSEGSPAPSCGPCQDFSITSAREFPGVASLPPPGSDRRIIAFPSIEPADGFRTATACASSMSGPLEQPDPIPLHARTVVLLI
Ga0210099_1001659	Ga0210099_10016595	F023130	MTRRFRVPATAFLLSSIMAMTGSVSQDAMAGIVLMSQVPGASIGQEEGPANIRSAENVAPHPQRSVSARNWIRGIVLLLIILLILWLIYRTFTGWKPMIS
Ga0210099_1003867	Ga0210099_10038672	F077453	VHKIVSYNTIFPTEIVLGDMYANPIVEDYLSLKPGRDNDVLLIVGDASGVLKDLAGWYEIAEGVVDYDTMCLNYAPLVMPEGHRIDHFAAGDAHYPDMQKVASQVPKGTLRHAWNRSCKNFDICWLRNGRGGWNGTSANLAIKIGLALDYTRLVLAGCPMDESGNWYRPQLKDNDVKKEKDHRHHLWKWCEIATRPIGRFIRSMSGNTADLFGRPTRQWLCHEPEIEGEEDHG
Ga0210099_1011946	Ga0210099_10119462	F034932	MKRIRVEGDSPDLIAGFVAGVEWVNDSGITVVDLDYSSRTPFVVLEDQDGTDDDEVLRLTVNGIEATE
Ga0210099_1012133	Ga0210099_10121332	F078289	MKKTVIILMTLFIVVPLYGFNSLVRHEDISKMRELGISQEVIQYFISNQTSSVSSEDVIDMKQSGVNNDDILSAIKSDLYRPEHTSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTRQYTNESQRIQYPTTGATFPKPDNYGYDPLNGRFLILVKPQNQ
Ga0210099_1013184	Ga0210099_10131841	F052687	MARFLAILILLAAAGGGVYYLLTMERVEDVKVIGKLQISQQFGSYVNTSQGDDAAYYAVVEGKVKNNLGKPIKNLFIKYMIAGQETSATVFDLAPGQEIHFNTSGVATSASNPEYDFIGLYYD
Ga0210099_1013985	Ga0210099_10139853	F029006	MAIYFVGDPHLQYLAWLGDLKLYIVAAAIALVSMPWIAEQLDG
Ga0210099_1014734	Ga0210099_10147342	F075999	MWKMRTIALGILLLTVPALAAAADKDKPSKSPKYYFKISNILTQDPKIIPMAKDLLEKEVASRPEFTMDLGDANSEDAQIAELQKQGMKGFQVSMRIEDLKTEIKPPAPGKRDQQMSVQVKVTVFGHTIPGNKMLFTGDGDAALMAEFSERLKDKEQERFQRTALAGAIKQAVTTAVAKLTTATLGDKTPARPKKGKRKH
Ga0210099_1018986	Ga0210099_10189861	F016971	QHRTGDVTNVVEIVVHVKEDLGEVQQHQVVSALEKTDGIIGAEFCPLRNHLVLAKYNKDIFSSQEVLKSFYSLNLDARLIGPI
Ga0210099_1019641	Ga0210099_10196412	F038641	LPDDPSIFDDERLYPLASVLCERGSAVGFDKLDTVIKVLSDPAGSLSQDDPRFQMMQNMTGIAITKAQLDQVAYVGPPRVYRVVATGESGRVKKRITAILDTARSLDYPVTSDPASEKAAGVIQYWREE
Ga0210099_1021338	Ga0210099_10213382	F016664	MDQVIHHMPTLSEAKNAVEIVVHVSDNLEDQQRRDLVAALEQEDGIVSAEFCPLRYHLMLVRYDRGRYSSQNVLRAVSTQKIQARLIGPI
Ga0210099_1023633	Ga0210099_10236331	F085105	MILNSLNNQFVLRFPKNFFYPEIHAKWEPVIKRLKLPYENLEDFMNASVQSLNFPAIDLPIVEQVQQQFRIAQRPGKELEPLFDKNLTLTFKLSEGFITYWILFEQIELFIQIYEVKKPFWDPMYVSFLDHHGFELVAFSFEKIIPTAMSQFDISYATTAAEFNTFTLNLRYNRFNIKRRIDDTNYNIKGR
Ga0210099_1025986	Ga0210099_10259862	F040163	MNPADPALLAEVLHHALDGVAVVESCGDASPRLLYGNATLAGLLRRPEEWLAGRTLEEFEVEAPADPNATSTGVGQRVRLRRSDGSTVECERWAHMMSDARLAMFYRPLPRSAPGALAAAVDRSSGLSTPEHLMEVLRRDWTIAQRDGRAITLMRFCVD
Ga0210099_1029622	Ga0210099_10296221	F096270	MEQGLTYTMPLEVYVPAAVVRGVLDTNLDRVSSHLMLRQNDQVFSLRDATVEDLGGQPIVSRATEYVVYMREVYLVADLSPASLSQRSGVEDLYRKKDTSKALISVGPYLIQGDVYLLPGGALYDLLLERNQFIPLTNARILDQRSTVTRTYLINRHKVGFMTALGDGLVEF
Ga0210099_1029749	Ga0210099_10297491	F077207	TSVVAPWPPRPSQAMRLPFFPIAIALLAMTGCYDRGARTPAEAHARLQAALAAHDSSMLWRSLDQDTQWSWMTIQRAWREAYDITQSVVPEGQERRHLLARFEPGATSENAETLFAKMLTPGDWAASQALVTAAGTRPPEISSTGESAEIATPAGSLVFHKAHNQHWGWGFSGLASRADRLKRNASADLERMRRDAADYERAAARGSR
Ga0210099_1030031	Ga0210099_10300311	F071802	MGAKTSKPNYDSLITKILIVLVILNIAGDVLAAAFFLWDPSLGGLSVYGGLIASFAGKNGAVMITSAILLGYAVVYAVSVFGLLSKLKWAPPLVIAVSVVNRVLALGVIFEPNAAFLIWSAWKLVIIALAGYLWRKT
Ga0210099_1033607	Ga0210099_10336071	F029036	NKAVGSIVYVPAVGEGDERSPANFQINISMSAAKFEALLKVAISGRLPSKFFVHAGERVSARETRGMGYAIRAGIRTKFWDNKRYRSLPVTNFSVILPISVPDAPESPVFEEDRAIAESLASNDQVAELADEFAVFQGETKNALTAVVSVVAVIGVLLLFINLVLIIK
Ga0210099_1035341	Ga0210099_10353412	F091050	MTFAEVLEWCKKQKADVRGIGRNMEIPISHKDNRLPANLPPMSKVMHWDLEIGDWSHYTSGSDMELMVAGKMTVDQFKGTLRGGG
Ga0210099_1036085	Ga0210099_10360851	F018997	PQEERLLQQLREHPKLMERFQSILQISANAEGPVQSADEIEALLIEELRRLGNTTMSDWAAHAERRLGDQLAQQEASAGVRKKKR
Ga0210099_1051202	Ga0210099_10512022	F034962	MRSLVVTSRPQLGASEPDSPAAALRELGCEVVAVGYDMDELPDDIEHVRPSVVV
Ga0210099_1052794	Ga0210099_10527942	F075847	MGEMRRLVSPARVFARPTADQIWLGPAQQAALSQLSRHQQARLLVGPSSSGKSTLLGHLATHLGNDAVVLQCRGPKETPTAVLASLLLSADLEPW
Ga0210099_1053611	Ga0210099_10536112	F045104	MMAQHAPRPRPAPSSNAPACCGLWCGPRRSAAVLFDPLTQRQLTLSLANTAPAHTTLLDWLAEQSAHLVIPDTLLALPCLNQASQTPVAVWVAPSALLEAIRLAAGLTTRAPKHTAALLARWPSAPALRPFLRRLAASPHPHQLALL
Ga0210099_1056826	Ga0210099_10568261	F028610	LPAEKLNWLQGQLVKAGKLKAPLDLKTVTAPEYRAKALKLSGS
Ga0210099_1057515	Ga0210099_10575152	F055239	NLVRAGKDQEAIAVIGDIMNAAGGERPGGNEGATAKLPIEFAGYVDPGPARTPIVKFSDAAIERAKKKAEAWKALCAKYKPLVEAARPQAKVA
Ga0210099_1058252	Ga0210099_10582521	F076224	VVVNAISKLKNASGDKYIFVTPDSIFEESYLFEPVIAEKKLKWTEKRIKANEKKIEEFTLKLKYDSTFKYYAEMKNGQPFTVAFDSNICRVDIPNFAVSEVPIPEIAAIDPLIEQATNNIHFYAYKIPKIEKSKSEIKIEYYNDDSVYSYVVNYNTLNIDSLVQANAGTDLYNLENFKPVKPSDDTMLIKYQIDRNYFHKYYSDDEFKKQMEELQKQLQELSRDLQNKKIRVHTEVTKSPGK
Ga0210099_1064866	Ga0210099_10648661	F068995	KLSKKPIFPKLCERPCTSIITLFPKDTIQGNTGKGYHMINIDGYRMINAYVISDALNSTNQRGFTLELSFALNDFVYGVGVVGETSYFFNFDSYFDAGTLSHKLQRCETNDLTTTGGLPMLGGVDLTHILRVPVMGPYVRASVFNEDGTARKAEVKAYLST
Ga0210099_1066771	Ga0210099_10667711	F084125	MSESLMSRDKAVARKKGLFALGTWAGAGILIFYHPMFGLLAAAGAVVLTYRWFMFRAKRGMRF
Ga0210099_1068619	Ga0210099_10686192	F001421	DEYRWHDEMRREAEFLRARGTVARYTVEQGQPHRLETLAGANAGRLFDDFKEAEGGCSR
Ga0210099_1071789	Ga0210099_10717891	F064823	WRQWNFMYPHFLANLGNDTIYVPREKIEARCEQYSTIGTLVLGKDHSEEQAPHLACTCGIYAYKEKPRLLREIGKTNSGLRLVYGEINLWGKVIEHEDGYRARFGYPKRLWCTPAIEPLAGWIGYVYGVPCEVMPSGDDEVIKIKSPMWKPDPKTIITKYACGHELTIKVEYTNWTAHFRDIWRRRWRSWPWQLTHPVKNAPIYYSVDFCPQCLVKQNERKSQ
Ga0210099_1074195	Ga0210099_10741951	F076659	PYLPAAANSLVRTLFWKTRSTPVHPPNAITYYLQHESMSSGRAEGFAAAVRSVCKPGERIFGEYSLGPFAAAIGPCVLGANLADTNPHRFKVHESTPEGWVTALEKDHLDIAIVVPGSPMMREPVLRDYLTGTFPRVVATWDDPYAGHVELRRRSE
Ga0210099_1079270	Ga0210099_10792701	F006247	MKRACYLTISFLSWTLWIQTISQTSDTWLAAPGLASQDKCLASVKDKLDMWKQFKDAKFEKNNVFFTGNNSSMSYVCLPDGEDPRKPVNTTKPEK
Ga0210099_1083641	Ga0210099_10836411	F015489	KDQLKGKRPSCCRCRSGAIHCHGTYERNADPEGSQEESVQRYLCYGCGLTFSVLLPHRLPYRSIRAERLQADFDQRAGIQTQGLDPPPRVAEAGCLQRAWSALTKRVTTLKDAFGQLVSSTVSDGASLWASLRQSFDSVAKMLCFLSEHHRISLLGHHRCLRPPA
Ga0210099_1087322	Ga0210099_10873221	F079741	VFVTLAPAMTQVPWKNLTAEDFVRRFIYETLLASDPDAPIEISLRRRSYLNDLNAFIGVKPSYWIQLRVTGRGIRVGEKLIDELFGELGFRLEEWVGVAASDTRLSIFATIDAPRLTMVFCLESLRHKLRCDLLLPIDNDPPVPTARSQETAGTSVQV
Ga0210099_1093959	Ga0210099_10939591	F018371	MQEMEVHVNGPDGANRLYIYSGMAEVEIRGGLPHPRWTLEVICFELGRTYNLPDESIIKINASAALAGGRMDGVASFAGWKIFGAAGELDNESSRVRMNIAAGARDTQAFLEQI
Ga0210099_1106020	Ga0210099_11060201	F001115	MAAPVRQRITNHNPVGRLDTSMKNELQNLTEDISRLYEDITQKTESLGQIDSIAKLYDDLQTQLQGISTEEIDLLQTQIKSTLEQMVGISKSLAVIKTLKVTLNSHDDIADLAKKSANGKDPRRTLEDR
Ga0210099_1109778	Ga0210099_11097781	F101240	HVAGRESQFTRAADYDIVYLQFCGRSKIESEGGVIEMEPGEIALVPSAISHRTIGMDDCLRMRVATQEAVTEGVDPEKPTTQNKFTVKPSEPMGSDNGQRSDNTEDSALEHISFWDPQSDLWVERNAAALIGCKRDGGRPVRKLSAFNYFTGMTGRGGARAPVLYNAKEFRVDVYNLEEEQNGFH
Ga0210099_1114799	Ga0210099_11147992	F000388	MKVLFVCKKYFQTEDDKVYFFEPLEEEISIEDMQKIVDANEKIIKELKDGKNPNSLXGIT
Ga0210099_1115092	Ga0210099_11150921	F005815	MNVTRLTTYWTVDEAATVIDFLDRLRDVLWETYGEQITRMHRDACEDRIQDVNQCELGFDDDIPF
Ga0210099_1117815	Ga0210099_11178151	F049731	LCAVKSRAVSNRNCVAAMRGGEQRNENDQSVTQVVQEDSRRELDSVGVDGRIFERKTKPAKRAIGEE
Ga0210099_1126259	Ga0210099_11262591	F001012	MTLASESLEQLVKLIGDEARVDERIRETQAALALVKRRVSESLAKHYITTREVRIQMPEDLMREEQSYERLLQALQDMKSEIAKQIRPVEEQIIQANVDHLRQTFSQESRRLSKCIEEVDDNILACQQYLQEYEHIRGSLAAINQKLAQLGAEG
Ga0210099_1129331	Ga0210099_11293311	F066187	SAHPRKLASIEHAEVLREVALKRVEAGHRRVRAYALAWGRLSLEAAGSSRMSCYRVLKREGLIQARRVGRDLREAAEGRRQMLKAPEKLNELLQGDFTDYVTEDGEKYRIGCVTEYLSRFNLVSEVLDTETALDLIAVTEAALKEVVALGHELPDQVVLVTDNGPAMKS
Ga0210099_1131121	Ga0210099_11311211	F010065	TGLYVCGAITLVMLVLKLSVIDTWSWWRVMLPLGLIVGFNVTNMVVAFIYLSFAHIPERPDGDEAEVLEPHTVNAHYVAAMLFFVVFGDNLVRWIEGSKTSHWFWLFSGKIEALAVFGALSVVALFSYWSRLGRVLKASG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025562: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences