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Sample 3300025514
3300025514: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold (SPAdes)
Overview
Basic Information
IMG/M Taxon OID 3300025514 Open in IMG/M GOLD Reference Gs0053062 | Gp0055495 | Ga0208490 Sample Name Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold (SPAdes) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 99093335 Sequencing Scaffolds 5 Novel Protein Genes 5 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria 4 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy) Type Environmental Taxonomy Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
Location Information
Location USA: California, McLaughlin Reserve Coordinates Lat. (o ) 38.8739528 Long. (o ) -122.4391613 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F001230 Metagenome / Metatranscriptome 741 Y F050234 Metagenome / Metatranscriptome 145 Y F059781 Metagenome 133 Y F067546 Metagenome 125 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0208490_100067 Ga0208490_10006787 F001230 MAETAAEAVRNAHRWFEHNSGWAPPDEETLEEWAADGVCRCPDECLVAPDAWCEHGLASWALILAELDRHP Ga0208490_100787 Ga0208490_1007875 F067546 VTSLASRSAPLTVRTESGAVVLELGDTLDERTGGVLVDAVASAVATTPERVDIDLTALTGWTAQGATSLVQCREMCRGLPDGLHYRTGRGAGREALLAAYR Ga0208490_101903 Ga0208490_1019034 F050234 VIPPWPLLVLMLEFPVLMALLDCWQRPEDHFAEGAADRRAWLRWLLVAVVTIPVLVGYGIVLGYYYAVVRRSSPASPR Ga0208490_103832 Ga0208490_1038323 F059781 VHPGQRLRIVTETARAVLDGRLDAEAGAATLALQQGQIADRLRSDRIDVTQAEADEVALTLRRLAEQVSDRTTGPGEVEHRAAIARILGELAQSLR Ga0208490_104201 Ga0208490_1042012 F001230 VSGAPVDADEAVRNAHRWFEHNSGWAPPDDETLAEWVADGVCRCPDECLVGPRDWCEHGLASWWLILRALEQT
