NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025458

3300025458: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025458 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0091512 | Ga0209559
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size226259254
Sequencing Scaffolds42
Novel Protein Genes47
Associated Families46

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga1
All Organisms → Viruses → Predicted Viral11
Not Available20
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F003975Metagenome459Y
F004164Metagenome / Metatranscriptome450Y
F004906Metagenome / Metatranscriptome419Y
F005571Metagenome / Metatranscriptome396Y
F007138Metagenome357Y
F008648Metagenome330Y
F008692Metagenome / Metatranscriptome329Y
F008720Metagenome329Y
F009369Metagenome / Metatranscriptome319N
F009560Metagenome / Metatranscriptome316Y
F010921Metagenome / Metatranscriptome297Y
F013764Metagenome268Y
F015265Metagenome / Metatranscriptome256Y
F017732Metagenome / Metatranscriptome239N
F018813Metagenome / Metatranscriptome233Y
F020602Metagenome / Metatranscriptome223N
F021646Metagenome / Metatranscriptome218Y
F025141Metagenome / Metatranscriptome203Y
F026401Metagenome198N
F026538Metagenome197Y
F030806Metagenome184N
F035965Metagenome / Metatranscriptome171Y
F039110Metagenome / Metatranscriptome164Y
F046020Metagenome152N
F046385Metagenome / Metatranscriptome151Y
F046847Metagenome / Metatranscriptome150N
F051972Metagenome143N
F052275Metagenome / Metatranscriptome143Y
F057395Metagenome / Metatranscriptome136N
F058452Metagenome135Y
F060973Metagenome / Metatranscriptome132Y
F061392Metagenome / Metatranscriptome132N
F062497Metagenome130N
F066851Metagenome126Y
F067831Metagenome125N
F068917Metagenome124N
F078263Metagenome / Metatranscriptome116N
F083345Metagenome113N
F089034Metagenome / Metatranscriptome109N
F091863Metagenome107N
F093660Metagenome106N
F098673Metagenome103Y
F100510Metagenome / Metatranscriptome102Y
F100949Metagenome102N
F101334Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209559_1005604All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga3892Open in IMG/M
Ga0209559_1008064All Organisms → Viruses → Predicted Viral2997Open in IMG/M
Ga0209559_1008331All Organisms → Viruses → Predicted Viral2927Open in IMG/M
Ga0209559_1008514Not Available2878Open in IMG/M
Ga0209559_1010574All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales2466Open in IMG/M
Ga0209559_1010974All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2396Open in IMG/M
Ga0209559_1011256All Organisms → Viruses → Predicted Viral2351Open in IMG/M
Ga0209559_1014693All Organisms → cellular organisms → Bacteria1928Open in IMG/M
Ga0209559_1017164All Organisms → Viruses → Predicted Viral1721Open in IMG/M
Ga0209559_1019213All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1587Open in IMG/M
Ga0209559_1019217All Organisms → Viruses → Predicted Viral1587Open in IMG/M
Ga0209559_1019719All Organisms → Viruses → Predicted Viral1555Open in IMG/M
Ga0209559_1021347All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1471Open in IMG/M
Ga0209559_1021807All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1449Open in IMG/M
Ga0209559_1022836All Organisms → Viruses → Predicted Viral1404Open in IMG/M
Ga0209559_1024205All Organisms → Viruses → Predicted Viral1347Open in IMG/M
Ga0209559_1025765All Organisms → Viruses → Predicted Viral1287Open in IMG/M
Ga0209559_1027463Not Available1232Open in IMG/M
Ga0209559_1029716All Organisms → Viruses → Predicted Viral1165Open in IMG/M
Ga0209559_1032655All Organisms → Viruses → Predicted Viral1092Open in IMG/M
Ga0209559_1034850All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1045Open in IMG/M
Ga0209559_1041448Not Available927Open in IMG/M
Ga0209559_1041822Not Available922Open in IMG/M
Ga0209559_1042463Not Available913Open in IMG/M
Ga0209559_1042879All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW907Open in IMG/M
Ga0209559_1048560Not Available834Open in IMG/M
Ga0209559_1051557Not Available802Open in IMG/M
Ga0209559_1051898Not Available798Open in IMG/M
Ga0209559_1055152Not Available767Open in IMG/M
Ga0209559_1064954Not Available688Open in IMG/M
Ga0209559_1066865Not Available675Open in IMG/M
Ga0209559_1069046Not Available661Open in IMG/M
Ga0209559_1073984Not Available632Open in IMG/M
Ga0209559_1082508Not Available587Open in IMG/M
Ga0209559_1082550Not Available587Open in IMG/M
Ga0209559_1084542Not Available578Open in IMG/M
Ga0209559_1093163Not Available540Open in IMG/M
Ga0209559_1094948Not Available533Open in IMG/M
Ga0209559_1095140All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.532Open in IMG/M
Ga0209559_1099093All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon518Open in IMG/M
Ga0209559_1102324Not Available507Open in IMG/M
Ga0209559_1104228Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209559_1003355Ga0209559_10033551F017732MHQFILNVIFLFLLTGCASKGYSIDEIFEDGAEIDSTPEDSIKYTCNQNKYFYIQYIGDEKKSLWIIFPKNEIKLYQTEISNVFSNGITKLIFNEQTTTVKKDGSIFYNECSKQT
Ga0209559_1005586Ga0209559_10055861F057395NCKPTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN
Ga0209559_1005604Ga0209559_10056041F004164MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSK
Ga0209559_1008064Ga0209559_10080641F009560EPMTFEENRKSFLDSLFSISTLLKRWHTEIQNKDVDKNYMIEKLTLWINKLEKLRHDIMMRKS
Ga0209559_1008331Ga0209559_10083317F039110VSKAVSKKADAKKTSAKLKLKAIADGSHGIDGGIYTYKKGDTVTLSKKAHYDSMKELSCFIEV
Ga0209559_1008514Ga0209559_10085143F052275TAVVWDSPDKAPIATVDTRHCLGCKSLVEVPIEFHGAGLIGDPDVVPSFLNRCPDCNSSNVQPWDAKHSCPKCGEHMTQEVAQG
Ga0209559_1010574Ga0209559_10105742F061392VVFKKLSIICAVFVVVIVLQLKTFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECATKAFEAKDWSCTGWEYLGTLPGFQ
Ga0209559_1010974Ga0209559_10109742F004906MATKTEKKTDARDTLDSNEGNELSAIAVKSLTNLEEKVEAIDWKLWEIYNMMKNYVESNPDGPSVPQVSQPQVSTTDIASEIAKALGNSQPEEKQSIVGKLFGK
Ga0209559_1011256Ga0209559_10112566F062497MIKMKGLITEDIDTDIKHNIDQIGVLQKEIDEIQKKLKPLKKEYGELIDNVLPILSKLGKEQMKTRNYIFKIIRKGYERQSFQYKEGFNKALGKVNNNIKKILEQILDDTKKMVDVKPKFQISPINEGFTDWLKSFTRKVLKNIIKP
Ga0209559_1014693Ga0209559_10146931F052275LSTRSKYKCHSCGYSAEAWDEPDKAPIATVDTRHCLGCKSLVEVPVVFHGGMFTDDQDVVPSFLNRCPDCNSTNVVPWIVRDGCPKCGEVMTSVEVQ
Ga0209559_1015335Ga0209559_10153352F078263MELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVTDKHNDLISKING
Ga0209559_1017164Ga0209559_10171645F068917SRDVKKVKDALQFKSEKDAKNQLNGLDWQFRGNYKIVKLKESVNEKISKDEWSEYPKYARKLKPYMKRLLKVPVKVRVIKQANHNPWIEVRVARFGKDVIPNDFRLKAAKVIGATSIKDKSNVNYGNIRSNSVSMKHDQWVKLLGRKV
Ga0209559_1019213Ga0209559_10192131F015265VTKSSTMYPDHITKNPALIEKNANVNLNNVGLPVFLNPINDIIPMASPTKNPIKLRIFSNKNSNYV
Ga0209559_1019217Ga0209559_10192172F091863MYELKCSKCDTIKTYTNKRSWYNARRCKSQCKPCQNKESSTYWKGRTKPNYPKKTNGKTTDGDWDRNCPDCNKVLYYSSKWGRDDAERNGRICNQCSAYKYKKSWNNVITDDHIKKMRATKAGFTSWEEYKQKYPSKKMYQNEVRRLTRKQPLHILPNYSKLEENWGKMGEDGAYQIDHIISINKGWKDMIPAEEI
Ga0209559_1019719Ga0209559_10197191F035965MNNQELIDLVVKTFDGVIIDDYGWEHYTIPNKKYDIRFDSSRIEWACDCPAFMYRRKFKKKYCKHIIEIQSKKL
Ga0209559_1019719Ga0209559_10197194F100510MNEPLDLNKKRPGPWDDETFELAEDVFARWDVENAKWYNKYFAIPFQRFIQTIKDFPSEAKWFYQRGSRGWSDRSAWSIDTWLVDNLIPMLERLKNNKQGTPMSMFKKKDGVDKDGNPTDEASVLAEQRWENVLGEIIYGLKCAKTIQNYDYEDKEEVKKLTKSSQRSFELIGKHLFNLW
Ga0209559_1021347Ga0209559_10213471F098673KPVKIDPLINSKIPKNNEKEKKELTVFLGFEIMKHKVTNP
Ga0209559_1021807Ga0209559_10218073F003507ERVHADRRQSHFVLPSVLAQFRGRLDETLMAELIQIQSTAAMEEGLVSPSHLVVDTFPSEQGSQRVNDAATLYKAKKKS
Ga0209559_1022836Ga0209559_10228361F026538MYKLNEDSIQRLSDNASVPIADGNRDYQQFLQDVKKEGISI
Ga0209559_1023159Ga0209559_10231593F101334KATLAEAFKMAFAEKYDVKRDEIKQGIVDKVYNNEKVDK
Ga0209559_1024205Ga0209559_10242053F026401MIKVESILKWTVEGSLLKKLKMVRAQILSKNPDAVAISDKDLHITLASGSGWQKLRSRIKANDIDEPEFSIDIDPSAKVIEKAGSKSWYVKLKNQQDWKEYVMDSLQGTYDSGRVYHISIANLTGNKMDSVA
Ga0209559_1025765Ga0209559_10257651F003975PKRWSKPVMKGENADGLTEFERIGVELGKLYTDKDRPAFKTPAQIKEDKLNEMDDDKRAFLMLKIYGQSWGVNMGKVFSGINKGKPTMIKKGLKEIKILNKKIEEMIEDLV
Ga0209559_1027463Ga0209559_10274632F051972QILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPSNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECEMMNKELKILKLQIKKLKRLK
Ga0209559_1029716Ga0209559_10297161F083345KDKAKGNTWEVSDEDADALLQIGAVSMIKKGLKVAEEEDYYAKLQKLADTDEWESDDDKEGM
Ga0209559_1032655Ga0209559_10326551F046847MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIDQLKGDKPYLFSGGEVQPKRVDAT
Ga0209559_1034850Ga0209559_10348502F018813MSMPCSITGDMSIGHAGFSPAPITPMTATVLVMGVPPHAAGDLIGPHVLGTSAHTGVVQDVSTTVTAGGKGLARMMDK
Ga0209559_1041448Ga0209559_10414482F100949MISDVKKINYVKRIYKRTPDKYLNLSEIEGWPRDEDWMNDEPHLNHGKMRRRGTVCPCVYEKYSEVTNRAIVNYISELLESEISIVLSIVDVEGVKSMIDGVHTALAYDKLGITEVPVYINSKSLPFGVCYKDYVIDKNGNKIKINP
Ga0209559_1041822Ga0209559_10418221F010921MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANAEHKGSELQKVMQVTYKLREEYK
Ga0209559_1042463Ga0209559_10424631F067831MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKDYLLSQS
Ga0209559_1042879Ga0209559_10428792F013764MSMLTPSFFFFRTNSKKSNSSGFPPYTKRALIAVTVAIPMAFGLNIPLNTFGTFVPVWGLIMINAIVIPSYMTFIIPRASKVFASWLNSTTVKGVN
Ga0209559_1048560Ga0209559_10485603F046020MIEVWASIILFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCNKLSDLRGNDITRFPVNVPLPTPK
Ga0209559_1051557Ga0209559_10515572F005571MAQTIKSLEERIVNLTKVSTDNVQTTVEAELRQLKMESGIPLQATVVLAKEDNFQFTMDWDATMSKFSTTIDGIKWYSDFDYSLYSPKLWETGATARASRRGRNSP
Ga0209559_1051898Ga0209559_10518981F008720SFVRDLHSKALINTDRVALENHRKRKQIEIQQAQKWQQMETKVEELNNVRNEILEIKILLQEVLNKKEL
Ga0209559_1055152Ga0209559_10551524F021646MTKRKLLSIMFYHIGHNVDRLLWMISPTYEWLEDKLADLYQWTMRKSAEYDDYYEVW
Ga0209559_1064954Ga0209559_10649541F009369CNLMDKKTQFHNLTTSDQMVYFDWMNALIEDGQIDPNIDNDEYIDKMERMHKCDVNQTEPIWPFFDGNNYFDPTEEENI
Ga0209559_1066865Ga0209559_10668652F093660HYSDEAVKLCKWYKDGAKEHNGITYVYIEFAFGWSPVAELEFDFDADGWWHGSYFFNSGKEISEFWQSELGINAYYLEKDKRQREIDSLINAHICEVSEGMMSLSHVG
Ga0209559_1069046Ga0209559_10690462F046385MNIYIPDTTAISPTVKPISIKYPNKATPKAVAKTINAVDKALIDPRYLTPYNSAQVEDPNIFANPLELPTKPKNMNAIIG
Ga0209559_1073984Ga0209559_10739842F030806METLNEPTHPTDYRLVKLMDGSLLIGTISVDDNHMRIANPLEMVTTPRMTELGLKEDTTLCRWIPFTQDKEFYISKDKVLVI
Ga0209559_1082508Ga0209559_10825082F020602MGIKYISGFRGLDHAKQHLRRSTHLGSVTTSSSTVLNPSEAFDPQACFVYLNGAMLREGTSGNGGDYVLSGTNTITFNTAVAATDIIEVVSYAFQNPTLPQTMQEVDHAV
Ga0209559_1082550Ga0209559_10825501F066851NIIHVDDNDIKYPCRFQYMHESEWKLGGVLKGLEEFSDCLKFVTSEKPSRDDRPPKRKQKRNDYGG
Ga0209559_1084542Ga0209559_10845421F008648ERGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKK
Ga0209559_1093163Ga0209559_10931632F058452MMETYAELLLRKERKVMTNYSQDEDDRINDRLTRAKRNSVSSVKIGKDETPHTAVDIELSDDDFMGVALQAHERDITFNKMINIILKDSIKQAEHKFEHGNKPQLLNEGK
Ga0209559_1094948Ga0209559_10949481F060973LNNGKYLSILDEIKKHGGKTDTTNPNEKVLIIDGLNTF
Ga0209559_1095140Ga0209559_10951401F025141VLYYMIQCEYCPRGFIETTNGLAEKTFHELLHEPEVVNK
Ga0209559_1099093Ga0209559_10990931F008692MKTKREIEKETSYMPSSEEEFQADLDAEDMRYHQYCREQQEMYDDDYMNWSGKR
Ga0209559_1102324Ga0209559_11023241F089034MNNFTKGIMILFGSILAWSSLEVTGSYIFAEGAGPVTLLSTRFLIATILFGVTILFQKYRTGENLFLVEKQDIKRFLTNGAFLAVHLITYWFGWEYLDPNIPVIYGIFYFYPFVL
Ga0209559_1104228Ga0209559_11042281F007138MIDKTIKLAGEYPSDFKPTPTVLEIHQYFNAHSFHNGRMIGGSKSVYRNMHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVLWETDGRFGLEMKPLNELFDKAVWNTSEDNPTKEWYKKKMKD

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