| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025252 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0053993 | Ga0208328 |
| Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MP2633 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 120013549 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Northeast of Antigua and Barbuda, North Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 20.0 | Long. (o) | -52.63 | Alt. (m) | N/A | Depth (m) | 4002.69 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000060 | Metagenome / Metatranscriptome | 2944 | Y |
| F005608 | Metagenome / Metatranscriptome | 395 | Y |
| F045803 | Metagenome | 152 | Y |
| F095625 | Metagenome / Metatranscriptome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208328_1035407 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 629 | Open in IMG/M |
| Ga0208328_1042465 | Not Available | 539 | Open in IMG/M |
| Ga0208328_1044681 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208328_1031875 | Ga0208328_10318751 | F000060 | MAQKFNTEFNYRYQVIGDTPWEKIKTLNGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPKA |
| Ga0208328_1035407 | Ga0208328_10354072 | F045803 | FFSLIIPNLSFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDPKH |
| Ga0208328_1042465 | Ga0208328_10424651 | F095625 | MITSESLKGILRDFGVHKYSTDWEKLVENLMSEFEKSYNEGYSFCKRESELVEKAAESLS |
| Ga0208328_1044681 | Ga0208328_10446812 | F005608 | MKTTKIEILKEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAETHVREYKKSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |