Sample 3300025243

Basic Information
IMG/M Taxon OID	3300025243 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0053865 \| Ga0208335
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025243 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053074 | Gp0053865 | Ga0208335

Sample Name

Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	121405408
Sequencing Scaffolds	35
Novel Protein Genes	38
Associated Families	34

Dataset Contents

Total Genome Size

121405408

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
Not Available	19
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Ecosystem Assignment (GOLD)

Name

Deep Ocean Microbial Communities From The Global Malaspina Expedition

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	West of Cape Town, South Africa, South Atlantic Ocean
Coordinates	Lat. (^o)	-32.81	Long. (^o)	12.77	Alt. (m)	N/A	Depth (m)	3901.64
Location on Map

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Location Information

Location

West of Cape Town, South Africa, South Atlantic Ocean

Coordinates

Lat. (^o)

-32.81

Long. (^o)

12.77

Alt. (m)

N/A

Depth (m)

3901.64

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F001625	Metagenome / Metatranscriptome	661	Y
F002030	Metagenome	601	Y
F002753	Metagenome / Metatranscriptome	532	Y
F003122	Metagenome / Metatranscriptome	506	Y
F005608	Metagenome / Metatranscriptome	395	Y
F006551	Metagenome / Metatranscriptome	370	Y
F007773	Metagenome	345	Y
F008648	Metagenome	330	Y
F008912	Metagenome / Metatranscriptome	326	Y
F016284	Metagenome / Metatranscriptome	248	Y
F018739	Metagenome / Metatranscriptome	233	Y
F019388	Metagenome / Metatranscriptome	230	N
F023136	Metagenome / Metatranscriptome	211	Y
F024888	Metagenome	204	Y
F031665	Metagenome / Metatranscriptome	182	Y
F034700	Metagenome	174	Y
F035337	Metagenome	172	N
F041248	Metagenome / Metatranscriptome	160	Y
F042383	Metagenome / Metatranscriptome	158	Y
F045695	Metagenome / Metatranscriptome	152	Y
F047117	Metagenome	150	Y
F050430	Metagenome / Metatranscriptome	145	N
F055778	Metagenome / Metatranscriptome	138	Y
F063768	Metagenome / Metatranscriptome	129	N
F066848	Metagenome / Metatranscriptome	126	N
F080654	Metagenome / Metatranscriptome	115	N
F081452	Metagenome / Metatranscriptome	114	N
F082562	Metagenome	113	N
F085813	Metagenome	111	N
F089050	Metagenome / Metatranscriptome	109	Y
F089571	Metagenome	109	N
F094378	Metagenome / Metatranscriptome	106	Y
F099485	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208335_1000053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52122	Open in IMG/M
Ga0208335_1000733	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	10803	Open in IMG/M
Ga0208335_1000959	Not Available	8845	Open in IMG/M
Ga0208335_1001831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5389	Open in IMG/M
Ga0208335_1003867	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
Ga0208335_1006108	Not Available	2385	Open in IMG/M
Ga0208335_1006133	All Organisms → cellular organisms → Bacteria	2378	Open in IMG/M
Ga0208335_1006821	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2223	Open in IMG/M
Ga0208335_1009311	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1804	Open in IMG/M
Ga0208335_1010063	Not Available	1712	Open in IMG/M
Ga0208335_1010803	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1633	Open in IMG/M
Ga0208335_1015357	Not Available	1287	Open in IMG/M
Ga0208335_1016977	Not Available	1203	Open in IMG/M
Ga0208335_1018587	Not Available	1132	Open in IMG/M
Ga0208335_1021407	Not Available	1024	Open in IMG/M
Ga0208335_1026283	Not Available	890	Open in IMG/M
Ga0208335_1026347	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	888	Open in IMG/M
Ga0208335_1028505	Not Available	840	Open in IMG/M
Ga0208335_1028993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	830	Open in IMG/M
Ga0208335_1030315	Not Available	806	Open in IMG/M
Ga0208335_1031811	Not Available	779	Open in IMG/M
Ga0208335_1038350	Not Available	680	Open in IMG/M
Ga0208335_1039163	Not Available	670	Open in IMG/M
Ga0208335_1040164	Not Available	658	Open in IMG/M
Ga0208335_1042757	All Organisms → cellular organisms → Eukaryota	629	Open in IMG/M
Ga0208335_1044173	Not Available	614	Open in IMG/M
Ga0208335_1045186	Not Available	604	Open in IMG/M
Ga0208335_1046307	Not Available	594	Open in IMG/M
Ga0208335_1046407	All Organisms → cellular organisms → Eukaryota	593	Open in IMG/M
Ga0208335_1047202	All Organisms → cellular organisms → Eukaryota	586	Open in IMG/M
Ga0208335_1051092	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	551	Open in IMG/M
Ga0208335_1052440	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	540	Open in IMG/M
Ga0208335_1053528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	532	Open in IMG/M
Ga0208335_1056227	Not Available	512	Open in IMG/M
Ga0208335_1056905	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208335_1000053	Ga0208335_100005318	F063768	MDLHATPDPLTTAEGVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPAIRTIRLVLADLEDRPR
Ga0208335_1000733	Ga0208335_100073314	F099485	MKQQIIHNWQHSPPKTQVARTPVKAVSKPLRQSQTITNEDLMGLSWIMFEESD
Ga0208335_1000959	Ga0208335_10009594	F085813	MDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIVGL
Ga0208335_1001831	Ga0208335_10018315	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLAGARQIAADQRLPVDPVAKGAGSEPELNLVA
Ga0208335_1003867	Ga0208335_10038671	F085813	TLNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL
Ga0208335_1006108	Ga0208335_10061081	F042383	MKGIKMETTYNNFSNPDDFYEGPSDEELKKIEEDLERYSD
Ga0208335_1006133	Ga0208335_10061331	F082562	MKIIILGILISLSTNLFAQTNDSLRNYNLDIELSIIHTILGCFGGTIGIEKNHSGFGVMGFGTKLNHMTKHYLMENAEELAVYNWGIELYSDYYFKQNHRGLFIGTFVSLNGFRFTDIPNPQTILVLYAVPRIGYRKYLPKKKNAFYFQPSLTLHSKVWDNQEQFLYREIDTKRIFLLSQLTIGMKI
Ga0208335_1006821	Ga0208335_10068212	F055778	MLSNVDLPEPELPTIRTISPRSIESDTLSRAFIFNSPSP
Ga0208335_1009311	Ga0208335_10093112	F089571	MFIIYLDKENGRKMLKNIIVIVFTVLFLVVPASSQHAQQKYAITDKDKKVILNDDGTWEYIEEGKQNNNYKRVPPKTYDYEFKPQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARRE
Ga0208335_1010063	Ga0208335_10100634	F005608	MKKATIEILEEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAETHAREYKKSE
Ga0208335_1010803	Ga0208335_10108031	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDKKKFLYREIDTKSIFLLSQLTLGVKI
Ga0208335_1015357	Ga0208335_10153571	F008912	MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTHDTVYFGATLVDSKYRIPFLQSIQDVCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE
Ga0208335_1016977	Ga0208335_10169772	F094378	SNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0208335_1018587	Ga0208335_10185872	F035337	MEYNLPVEITWNEEDQATIDIICDACEKRYIILTNDISNLEQCSFCGHYLEVSTEDIHEFQEDSWD
Ga0208335_1018587	Ga0208335_10185873	F047117	KDITIEEGQEFANVKQQQINRKQMRITASFHMKHGLYKKPEFKFFQSIGMFNFFQGFKSDDLDLGVYHLYWDRDAENTIEYYDPKTGERTNNIKGDWRERWYDPGEEIKPVEMDNPYRPDPAKMAKWWMETQGSIQAKIMMKQQEKAETEDEENRPWHHIPKPQWEN
Ga0208335_1021407	Ga0208335_10214073	F002030	DMIGFLIFGLVVLSTVCLWLLIEERKSPKFLIWFIPVLLVLVTSTYVTYTSILGFPKVGIPERGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTREKHNALEGVRGKAEEGNFMILGKDEVLGYGNGGDDHRGSSPGSGYTIGGDISFYKWDFAENMPPKNTQE
Ga0208335_1026283	Ga0208335_10262831	F024888	MNLDKIDLKNIHKIVGEMVGAIQKEEMKGKTPDEFAQEKGFSDWLEYAAWSRHTGGDYQMMEMMLKSKWKEQDPEEFARQKKIEGDQSTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW
Ga0208335_1026283	Ga0208335_10262832	F001048	MEYFSNWSIMKIKSTKQFWWRFNHLKRNGGEITVTDRTTEMDVKDFNRIESLVHKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS
Ga0208335_1026347	Ga0208335_10263471	F023136	SDKNAIIKKDRNTIPKDLILDFKFKICFVETIKEANIQNCVKKTIGITNSGVTAKNLTKPGAWA
Ga0208335_1028505	Ga0208335_10285052	F008648	MKSFKGYLIERGTSLSDLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDSDGVKSISKLEGKKGQISAFFSMFSRYMEVGVATQGGVHAVLEMDADVLLSASGDVMSHLDQSGRRWTSISDLKETSRWTKFSAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMA
Ga0208335_1028993	Ga0208335_10289931	F041248	MRSKQHGKRLRQEGAIERIETSILVHEEQLKSNKNDDEKKLLKKKIERAQATVENTKGNM
Ga0208335_1030315	Ga0208335_10303152	F081452	TLADAHLLSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA
Ga0208335_1031811	Ga0208335_10318112	F018739	MTTQNYEPTLDLVKERMAKIDGLIEKFRDLPDVQQKLQGAKDALQESEEEIMNYFDLTDIVKRDLN
Ga0208335_1038350	Ga0208335_10383501	F080654	NSRLLKKKPGIQDSKKINAEILETVVADIISEETAESEPVGKTNLEERQDLWNKIQKFDPEASAMDYYDNGEWDLEKRRSDVKVLLEKKRFGRYI
Ga0208335_1039163	Ga0208335_10391632	F003122	MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESSMPQKNPKE
Ga0208335_1040164	Ga0208335_10401642	F050430	MDNKLKENLMVGTKIVGMLFFLIVLITTLVWPGGVDTLANLFFTKE
Ga0208335_1042757	Ga0208335_10427571	F002753	NTVSDRFTPAAFDIESVKLTVSDRFTPAVFEIESVKLTDSDRFTPAVFDIESVNNTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAV
Ga0208335_1044173	Ga0208335_10441731	F089050	MVELNHDVVSFNSDTLVKGGHGVLVSVYVTKVGSGSNKVEFKNGT
Ga0208335_1044173	Ga0208335_10441732	F001625	MALTISTSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANSSSATNSKIFEFLVIGY
Ga0208335_1045186	Ga0208335_10451862	F031665	MEEQITQWVAPLVGLGITAIIVLWFKEAVGDVVASIRWKMKPGFEPGDVVYLDGEEATIVSIGFRETIFELNNGRGKVWRYIYNKRIPYHKLEKIISGMGDDK
Ga0208335_1046307	Ga0208335_10463071	F019388	MQSPNEQNPYLVETKNGKILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF
Ga0208335_1046407	Ga0208335_10464071	F002753	AALDIESVNDTDSDRFTPAALDIESVNDTDSDRFTPTVFEIESVNNTVSDRFTPAVFDVSSVNDIDSDRFTPAVFEIESVKLTDSERFTPAAFAIESVKLTDSERFTPAAFAIESVKLTVSVRFTPADFEIESANNTVSDRFTSAALDVSSVNNTVSDRFTPAALDVSSVNNTVSDRFTPADFEIESANNTVSDRFT
Ga0208335_1047202	Ga0208335_10472021	F002753	DTDSVRFTPAAFDIESVKLTVSDRFTPAAFDIESVKLAVSDRFTPAAFAIESVKITVSDRFTPAAFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVNDTDSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPADFAIESVKLTVSDRFTPADFAIESVKLTVSDRFTPAVFEIE
Ga0208335_1051092	Ga0208335_10510921	F016284	MTSKTLKNMRKELLDKYSGKITGYEHLDDGTGDYARIVPKDFEKESEETSEKT
Ga0208335_1052440	Ga0208335_10524402	F007773	VSKNNIINLSDYRKEKEKETPQNPPQYIQDFEVGGYYIYPELGVMLHCMLITDSSHTHKNELMYIMEDQFGNIFSVPIDDPDSMMGWRLLEKEV
Ga0208335_1053528	Ga0208335_10535282	F034700	MAEEEPIVDFGFSAVTADEYERDNTDGENTGSGGSASPGALASMDAKIEQIMAALSSKSDAPPDDFGFSQEDK
Ga0208335_1056227	Ga0208335_10562272	F045695	MNSKREAFLRIWNKEAPKIRDTIKQKLLVRGIEPTQLNCYEYWMGYIKPWKNTRGDISHLNPYRNEGFMRSIGRTKYGTPYNMARRNKNKKR
Ga0208335_1056905	Ga0208335_10569051	F006551	FESLDRIVSTSAEEGTLGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025243: Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences