| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025200 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054678 | Ga0208569 |
| Sample Name | Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 48745839 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South of Eden, South Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -38.64 | Long. (o) | 150.41 | Alt. (m) | N/A | Depth (m) | 4001.15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045803 | Metagenome | 152 | Y |
| F060979 | Metagenome / Metatranscriptome | 132 | Y |
| F063768 | Metagenome / Metatranscriptome | 129 | N |
| F084715 | Metagenome / Metatranscriptome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208569_1003066 | Not Available | 1568 | Open in IMG/M |
| Ga0208569_1005089 | Not Available | 1244 | Open in IMG/M |
| Ga0208569_1014892 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 689 | Open in IMG/M |
| Ga0208569_1019338 | Not Available | 590 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208569_1003066 | Ga0208569_10030662 | F063768 | GVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPAIRTIRLVLADLEDRPR |
| Ga0208569_1005089 | Ga0208569_10050894 | F084715 | PIIASIIFVLEFEVNNPTAHVNITRDITLGFISNMKDFI |
| Ga0208569_1014892 | Ga0208569_10148922 | F045803 | MLKLFRISILLLFFSLIIPNLSFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDP |
| Ga0208569_1019338 | Ga0208569_10193381 | F060979 | VTTTTEDEQLASIALGDGDGGSQPPIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSRLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |