Sample 3300025191

Overview

Basic Information
IMG/M Taxon OID	3300025191 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054432 \| Ga0207921
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0104 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	55484830
Sequencing Scaffolds	6
Novel Protein Genes	7
Associated Families	6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North of Cape Verde, Atlantic Ocean
Coordinates	Lat. (^o)	21.51	Long. (^o)	-23.45	Alt. (m)	N/A	Depth (m)	4005.12
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F001487	Metagenome	686	Y
F014192	Metagenome	265	Y
F045803	Metagenome	152	Y
F089570	Metagenome	109	N
F094378	Metagenome / Metatranscriptome	106	Y

Family

Category

Number of Sequences

3D Structure?

F000060

Metagenome / Metatranscriptome

2944

F001487

Metagenome

686

F014192

Metagenome

265

F045803

Metagenome

152

F089570

Metagenome

109

F094378

Metagenome / Metatranscriptome

106

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207921_103246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2651	Open in IMG/M
Ga0207921_113123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1085	Open in IMG/M
Ga0207921_115648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
Ga0207921_116165	Not Available	914	Open in IMG/M
Ga0207921_120834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
Ga0207921_129216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207921_103246

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

2651

Open in IMG/M

Ga0207921_113123

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1085

Open in IMG/M

Ga0207921_115648

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

937

Open in IMG/M

Ga0207921_116165

Not Available

914

Open in IMG/M

Ga0207921_120834

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

726

Open in IMG/M

Ga0207921_129216

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

531

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207921_103246	Ga0207921_1032461	F094378	NWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD
Ga0207921_113123	Ga0207921_1131231	F089570	FFIFIINPSFSENERPSLDLNEKQKTIVDNALSSCSDVNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI
Ga0207921_115648	Ga0207921_1156482	F045803	MLKLLKISILLLFFFLIHPNLSFSNELIERIKKVEKSVSDAEDAFAIGSKGHFQSLEELLEIRKKLVRAKEMYAEIKNYETKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDPKH
Ga0207921_116165	Ga0207921_1161652	F001487	MKKFTIEVSHASPAQLTTIGLELKIMSNGWEKFGLRIKINGQELQAPS
Ga0207921_120834	Ga0207921_1208342	F045803	MLKLFKISILLFFFFLINPNLLFSNDLIERIKKAEKSVSDAEDAFAIGSKGHFKSLEKLLEVRKKLVKAKEMYAEVKSYEEKLDTAHYKNTTIRILDDLEPLTKYIIEHSGLDPKH
Ga0207921_124241	Ga0207921_1242411	F000060	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIEHESHQGSLKEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPNKTK
Ga0207921_129216	Ga0207921_1292161	F014192	KIENEKKFINVKLYGEKPSIVTAPSKKGAKNRTKNLLFNKAIKIKSLLLSN

Scaffold ID

Protein ID

Family

Sequence

Ga0207921_103246

Ga0207921_1032461

F094378

NWRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD

Ga0207921_113123

Ga0207921_1131231

F089570

FFIFIINPSFSENERPSLDLNEKQKTIVDNALSSCSDVNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIFTETYI

Ga0207921_115648

Ga0207921_1156482

F045803

MLKLLKISILLLFFFLIHPNLSFSNELIERIKKVEKSVSDAEDAFAIGSKGHFQSLEELLEIRKKLVRAKEMYAEIKNYETKLETAHYRNTTIRILDDLEPLTKYIIEHSGLDPKH

Ga0207921_116165

Ga0207921_1161652

F001487

MKKFTIEVSHASPAQLTTIGLELKIMSNGWEKFGLRIKINGQELQAPS

Ga0207921_120834

Ga0207921_1208342

F045803

MLKLFKISILLFFFFLINPNLLFSNDLIERIKKAEKSVSDAEDAFAIGSKGHFKSLEKLLEVRKKLVKAKEMYAEVKSYEEKLDTAHYKNTTIRILDDLEPLTKYIIEHSGLDPKH

Ga0207921_124241

Ga0207921_1242411

F000060

MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIEHESHQGSLKEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPNKTK

Ga0207921_129216

Ga0207921_1292161

F014192

KIENEKKFINVKLYGEKPSIVTAPSKKGAKNRTKNLLFNKAIKIKSLLLSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025191: Marine microbial communities from the Deep Atlantic Ocean - MP0104 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences