| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025166 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0053873 | Ga0208567 |
| Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MMD0.2 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 15606946 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 1 |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Balearic Sea, Spain | |||||||
| Coordinates | Lat. (o) | 40.83194 | Long. (o) | 2.44806 | Alt. (m) | N/A | Depth (m) | 1500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012354 | Metagenome | 281 | Y |
| F013190 | Metagenome / Metatranscriptome | 273 | Y |
| F031645 | Metagenome | 182 | Y |
| F040684 | Metagenome / Metatranscriptome | 161 | N |
| F063198 | Metagenome / Metatranscriptome | 130 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208567_101217 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon | 1083 | Open in IMG/M |
| Ga0208567_101383 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 1031 | Open in IMG/M |
| Ga0208567_102280 | Not Available | 846 | Open in IMG/M |
| Ga0208567_102681 | Not Available | 795 | Open in IMG/M |
| Ga0208567_105615 | Not Available | 581 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208567_101217 | Ga0208567_1012171 | F013190 | LENSSMRTPNFMSLSQLYFSNAELGQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSDVLVLAENSNLIK |
| Ga0208567_101383 | Ga0208567_1013831 | F012354 | KSSRINPAANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPIRFRIISRKNSNYADSVTVLNKV |
| Ga0208567_102280 | Ga0208567_1022801 | F031645 | RATIIEKKVCLQKRICHRLAPSKDFTIMPPKLKHSAPSRTKTVPGILFNSVNLSL |
| Ga0208567_102681 | Ga0208567_1026812 | F063198 | LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVHTGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKKPKIAIKLNASNTVLTFIALR |
| Ga0208567_105615 | Ga0208567_1056151 | F040684 | MKRVIYFIILAMCLTLVFSQGKPCCKNKAGKGKVSCKFNQANIDVNNDGTVTGKGSQVATVGGIQCPHAAQNTSVNKKNCVNCVKTPWWKFWLKKKNCCNAKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |