NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025117

3300025117: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025117 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0056924 | Ga0208958
Sample NameSoil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size439981598
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis1
All Organisms → Viruses → Predicted Viral2
Not Available3
unclassified Thiobacillus → Thiobacillus sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019877Metagenome227Y
F033383Metagenome / Metatranscriptome177Y
F048726Metagenome / Metatranscriptome147Y
F057792Metagenome135Y
F071379Metagenome122Y
F071896Metagenome / Metatranscriptome121N
F091086Metagenome107Y
F094578Metagenome / Metatranscriptome106Y
F099974Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208958_1002223All Organisms → cellular organisms → Archaea17157Open in IMG/M
Ga0208958_1008599All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis5839Open in IMG/M
Ga0208958_1024240All Organisms → Viruses → Predicted Viral2553Open in IMG/M
Ga0208958_1054205Not Available1390Open in IMG/M
Ga0208958_1064632All Organisms → Viruses → Predicted Viral1209Open in IMG/M
Ga0208958_1082307unclassified Thiobacillus → Thiobacillus sp.1004Open in IMG/M
Ga0208958_1099407All Organisms → cellular organisms → Archaea865Open in IMG/M
Ga0208958_1137058Not Available668Open in IMG/M
Ga0208958_1140742All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium653Open in IMG/M
Ga0208958_1158948Not Available590Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208958_1002223Ga0208958_100222335F094578WPLQRLKGMYFAMHCWKCKKFELPMEEYKIRCENNIQKIIDDLNVKEMKFKEFNEIIKNSTFCEFEKRDFSNNCPICKKLDVITTDFN
Ga0208958_1008599Ga0208958_10085991F048726MTNFIGRSLTANQAEQNVELNMAFINLIVNDSASVVTLSFDIASASASGNLMVLKVGEARENIAVPFGKLYYKAAADASA
Ga0208958_1024240Ga0208958_10242401F099974MGAETKELAKVSYVTDTDVSYYEIGEVEGAFQEAQLKDYIKRFGHEKICSQLGYMQFQIWKAVREINGERDSQEGAKDVSCTNAT
Ga0208958_1054205Ga0208958_10542052F033383MNILHWMKKENSGLARTTLELAIYEEKQGHTAVIRQPQDEKPIYGTITDIDVDCIHSQIGTTAIHERRPKIMWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK
Ga0208958_1064632Ga0208958_10646321F057792MASTARELHIASINALLVKHGANLDRYGMYHIGNYKFDTRAVNLKIFSGKTKIKSTPMMKVTLEALERSLKIY
Ga0208958_1082307Ga0208958_10823072F071379MPDTFPMPPRSCMALALAFALAGCGSNALPKPETPSIEKRLLDLERRMDRMEARFAVAPPYRNKAEIQAHIQELEAERAELLTRYLPQHPAIQDIDRMLWILGKQLQELE
Ga0208958_1099407Ga0208958_10994073F094578NIMEDKKERPKWLLQRLKSMYFAMHCWKCKKFELPVEEYKQICEDNIQKIIDNLEVKEMTFKDLNNTIKNTSFCKFEKRDFSNSCPIKLRLKPEGFCD
Ga0208958_1137058Ga0208958_11370582F071896IDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTK
Ga0208958_1140742Ga0208958_11407421F019877LRPLTRLQVWRIVKAASRRANVQVLALRDSKDGKAGEPAPIHPHLFRHARIRQTLRTSKSLPLVQRQAGWSRLQMAYLTMGDEEARELMRDVAE
Ga0208958_1158948Ga0208958_11589482F091086MQDIINTIKISNNPKEVKQILKSLKIKEVIKVANGLNVKIRGNENKTEIISNIILEIIKYKGDE
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