| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025104 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0138775 | Ga0209721 |
| Sample Name | Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 227655718 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 18 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Africa: Tshipise | |||||||
| Coordinates | Lat. (o) | -22.6092 | Long. (o) | 30.1749 | Alt. (m) | N/A | Depth (m) | 2 to 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001564 | Metagenome / Metatranscriptome | 670 | Y |
| F008501 | Metagenome | 332 | Y |
| F012675 | Metagenome / Metatranscriptome | 278 | Y |
| F013791 | Metagenome / Metatranscriptome | 268 | Y |
| F018544 | Metagenome / Metatranscriptome | 234 | Y |
| F038253 | Metagenome / Metatranscriptome | 166 | N |
| F041729 | Metagenome | 159 | Y |
| F049080 | Metagenome | 147 | Y |
| F051242 | Metagenome | 144 | Y |
| F053057 | Metagenome | 141 | Y |
| F062520 | Metagenome / Metatranscriptome | 130 | N |
| F070754 | Metagenome / Metatranscriptome | 122 | Y |
| F088948 | Metagenome / Metatranscriptome | 109 | N |
| F090019 | Metagenome / Metatranscriptome | 108 | N |
| F095698 | Metagenome | 105 | N |
| F103321 | Metagenome / Metatranscriptome | 101 | N |
| F103505 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209721_1000268 | Not Available | 51786 | Open in IMG/M |
| Ga0209721_1001735 | Not Available | 15338 | Open in IMG/M |
| Ga0209721_1005763 | All Organisms → cellular organisms → Bacteria | 5066 | Open in IMG/M |
| Ga0209721_1006072 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 4798 | Open in IMG/M |
| Ga0209721_1006088 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium | 4791 | Open in IMG/M |
| Ga0209721_1006479 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 4539 | Open in IMG/M |
| Ga0209721_1008548 | Not Available | 3465 | Open in IMG/M |
| Ga0209721_1008755 | Not Available | 3384 | Open in IMG/M |
| Ga0209721_1017131 | Not Available | 1772 | Open in IMG/M |
| Ga0209721_1017957 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1695 | Open in IMG/M |
| Ga0209721_1022912 | Not Available | 1368 | Open in IMG/M |
| Ga0209721_1033487 | Not Available | 989 | Open in IMG/M |
| Ga0209721_1034805 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6 | 958 | Open in IMG/M |
| Ga0209721_1040262 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 849 | Open in IMG/M |
| Ga0209721_1067806 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 562 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209721_1000268 | Ga0209721_100026829 | F041729 | MSAKTFEGSVSIVKNTKGEIALKRDPEGRFSAANAAECYAKMMELCKRLKSPVNKYSLFIADGGTEPVMLANRFGNPYIALLPKRGDGNVKRSAVTKLA |
| Ga0209721_1001735 | Ga0209721_100173513 | F008501 | MLERMYKKSAVDLTDLALGVVVLGIVVSVGVTILTNIRDTNQPNSPAYNITNMAANGLAEYGNWFKIIVIIGVAAVILALIFMAFGKGSNTVGSTY |
| Ga0209721_1005763 | Ga0209721_10057635 | F051242 | MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCEYLSELYESAEEENKSSVEKKKA |
| Ga0209721_1006072 | Ga0209721_10060726 | F103505 | MDPLLLQELQTRLLNWLTQGYQVLADDVDGELRVTVLYVSPGTGVGSERVQEYWPMSAETAKLLNDHGIVISRALAGPRPWPGVHPEDI |
| Ga0209721_1006088 | Ga0209721_10060881 | F053057 | LKIRDIITAEVIETSAGASFDDLESFTVPPGTFLEVTHVAVENRTNDYTRLVIGVADGISFYQKEEENNPRANDIYWTRSKFLIPE |
| Ga0209721_1006479 | Ga0209721_10064793 | F012675 | MTAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLLEVKKMGDAQNVVSVVQKLRNEALRESLGAFGIEVPARYVRTSSSTGRSRVRIPREQKQQLVENFLDALPTFEGLKEVLDSLPSNTNLTVKQIRSLVNRYLSIANRLQTQATQEEDTQE |
| Ga0209721_1008548 | Ga0209721_10085485 | F103321 | MYYYDDMEVDQSQSDCIKIPAMNERTHLIAYNMKDALTDLLHKAVSLSNAKSNLYGEIGDSDVKVLIYSLPTKLIMNTAKLFGDSIRGDIDEGTIIDIITYSLYIHSVVNGNDYRNIESILNDSYKIIQQRHYDYNSADLIYDRLSMSDITSMIHIKAIRIKNLLNNIDKSNDNGVIESIKSRIIDSIYDLMIYIAMAFLKLYRV |
| Ga0209721_1008755 | Ga0209721_10087552 | F088948 | MPGYLFYYHRQTPSIQLPNLHEVLQDSKTINTISYERVTDFGIVPFLFVEGIPSNPYYDITNKIKQHLKTQNIEPEKIKVVHYQKDEIHQYGQSRIPWHYIGTKITKQKISIEDINKKLDKIKLDKSEVLFLESTRVGKELLGFLAERDVDAVEMLKFFLDRASQKLKVEVPIKDYDLLYDMLYDVYEYYIWYGVRSEIGNFHTLIENFYRYYLLNVLPKAVGLYWLDTYYDPSALVTQIKL |
| Ga0209721_1017131 | Ga0209721_10171311 | F090019 | KLDGLVSYLNRILGAARRIVRSVRVPDPMPPGNIIVGSDYFAAKIIMADGLTGLGANAETALQQFIADRYSKKLAQVYEGVRIPFTEQDYVSLAQQGFPGVRRLRWAINSDYAEVDYEILTTMQPQKTTFIL |
| Ga0209721_1017131 | Ga0209721_10171312 | F070754 | MIVRDFSFDIIDSTTNTYKPFDPLTGTLILAPLDRYKIRVRDRYFVVIEPLQGNIDDPDPNAFVTAYSGGWGPGGTFSLNLLSQDFEQEGFAIHDEVFVFLHWATSTSAFHCTIIGLNGSSATFRTIDFTGSAPNIQAPLRAVIILLSDRSEIKPSFHFGNNSGPTSPLSAIPFTSPHADAIIAYTSTDPTDLPSPLTYNLQKYASMENSIVSYGNYLLGFSPLDFRRRAIIVEGTQFYAYRTNLDPQAQAQTTLYALDGRIEVLLQAPASVRDAALTFPCLLLHPNRKGRTLNFLNPGALNISGGIYTLNPPSGFSPTRYVLAVTGRDSDHPRLDIGDSLALTNPVMGATGTVPTIANRPGAEFVGVMIGQDGVEWVAVMTNKEPATTPTAGAFQVYYHQGPIYRYDSLMAELTGPDTPAGIYIIQTLLKVGNSFVPIDEIEYDTANIVTAPWPWSP |
| Ga0209721_1017957 | Ga0209721_10179572 | F038253 | MPFVSRVFPCAFDDMSAMETHGKNTKGVQEELLRIIQSDEARELIESMANRMAVIEEAYYRIRELREAVQPYIPDNSEYDEDYWIAAYLVRPHASTVIEKFRQLREIQHKLAKIEGQLQEMDRHGSYLEDKLGDLDAAQENMGDKIYKLISEDAKSYLSFGDSNLYDLLYESTREWAAKQLSANRS |
| Ga0209721_1017957 | Ga0209721_10179573 | F018544 | MTQVQNSGTELKVRIEKALQERSLKKLITKLAKELDGEHSFLPQAVEAQIRNEIASAGVAVSQYGGWYRCIAAYLLLPKLDDLLQVKEMGDSRNVAPIVQKLRKEALRESLSAFGVEMPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLR |
| Ga0209721_1020332 | Ga0209721_10203322 | F012675 | LSAFGVEVPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLREVLDTLPSNTNLTVKQIRSLVKRYFSIANRLQTKTYQEETTQE |
| Ga0209721_1022912 | Ga0209721_10229121 | F062520 | MANRRFVAVVAAVPNLKVDELKRLPTFVDERNIPDMGGNLKTWRWTNNPEVYEIYYNEAGILRYHYFTDRISNDSIKNLIDFVRNNKIDAQVPNNAFINASYVFSTTVEQSPELYSAIIAPAMFLEADNVGLARGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEHRILSSRIFTADKAVAR |
| Ga0209721_1033487 | Ga0209721_10334871 | F095698 | MRIFLESEEFWFEDFKVDNLMEAISKLKALYRDCRECFKEDRIVRKIGIIIE |
| Ga0209721_1034805 | Ga0209721_10348051 | F013791 | KPQKLVNLPAGCCIGAREITHPCKVESRSGTNMKVFISYGDAADQVTALRLQALGAANGLTVYVPPAYTRQGAQAFLDPVTSQKLSDAEVVLGFVGNTLSEACRQELNTGLALRKNMIVMAYPHIAEQLQPYLSRHLVVVDPANPDQSEIGIVEHLRQIEAQQNAKKALLALGTLVLGLLILAPAEQS |
| Ga0209721_1040262 | Ga0209721_10402621 | F001564 | SLRFLIHWALRRDELCDPGLCPDAPDDSGRCGHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIRLDEIRADEFQALVVLEEERDALEREQMQMNAHGR |
| Ga0209721_1067806 | Ga0209721_10678061 | F049080 | TLSKEEIVHLYHGGILSVKIKGKEGDANLEISCGEVPEKKGTRIRFKTIEAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |