NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025095

3300025095: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025095 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0056902 | Ga0208977
Sample NameGroundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size270649229
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes2
All Organisms → cellular organisms → Archaea → DPANN group1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007341Metagenome / Metatranscriptome353Y
F030514Metagenome185Y
F046803Metagenome / Metatranscriptome150Y
F056711Metagenome / Metatranscriptome137Y
F065251Metagenome / Metatranscriptome128Y
F067453Metagenome125Y
F086459Metagenome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208977_1027119All Organisms → cellular organisms → Bacteria1466Open in IMG/M
Ga0208977_1031920All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1314Open in IMG/M
Ga0208977_1035293All Organisms → cellular organisms → Archaea → DPANN group1228Open in IMG/M
Ga0208977_1038300All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1163Open in IMG/M
Ga0208977_1055661Not Available906Open in IMG/M
Ga0208977_1085887Not Available678Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208977_1027119Ga0208977_10271194F007341VDVVFAPSAFRHGYAEQDFYELLAGRYLKIRSQRGLDDVYELLGRNLSGDYLHIVYRMLPAGRLRVFHISRMTEKQKRRYQRLER
Ga0208977_1031920Ga0208977_10319203F086459VIYAKDRILAELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIERAKMAVRAMHPVCHQADFLKRKTEKKGHRQ
Ga0208977_1035293Ga0208977_10352932F065251MYLRFFKKGRKKYYYIAKAVRKGVRVIQKSILYVGTADTLY
Ga0208977_1038300Ga0208977_10383002F046803MAKEGQTFEQWLRGAKVPPEQLSDQQRAVLHAAFQFLQPSNGDYSSSRIAGYFLLHCKVGLKVAQIARLVGISTRSAFRHGKLSARQVVQQIQHRFNGRPYGKLLPRHAGSIAEFLFTHPGATRDELLDFIGHTWEFRVSKVALWEFLKKYGLDRASLEEARQAASREEEERVTVEVLDARAPGGLVPVVPDKFFLPIPSTPGLSCCGPKCSLGSTRPASALATTTVRSSGVS
Ga0208977_1055661Ga0208977_10556611F067453RLDRAVQRFAEWLHRRIAGPVQVRFNSHRLSGGAYVYPDAAPDARITFDTPEIGLGARLITPASVQRRRDRAWSKGEGSSLAALEWEDCWTESTPLSYNVLVYPEFLRDPNDLGEHKPSDRFGYWSVKTPREAYRLLQRLIVKGTFHAQL
Ga0208977_1085887Ga0208977_10858871F056711GGIVPPHKGEDVMGRGTQSPCPLCFPLRIRMRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDMDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0208977_1131495Ga0208977_11314951F030514SLDFMHAQPADVKSLIQKRLGASETPIVDHIYALVTKYAARNGIPSQKAIENTLLGTPFKGKLTNFDKLTDFSMAREVAEGK
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