| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025037 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0122841 | Ga0208435 |
| Sample Name | Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 59878164 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Caribbean Sea: Cariaco Basin | |||||||
| Coordinates | Lat. (o) | 10.847 | Long. (o) | -65.114 | Alt. (m) | N/A | Depth (m) | 237 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039681 | Metagenome | 163 | Y |
| F044724 | Metagenome | 154 | N |
| F052647 | Metagenome | 142 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208435_107644 | Not Available | 1502 | Open in IMG/M |
| Ga0208435_109705 | Not Available | 1228 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208435_107644 | Ga0208435_1076441 | F039681 | MSTSTGFEIGDPTKLRIKPTYNVGDYGHDVSFPLLLSQATNLVTLTPSTSSFHQTQHDSANPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQPDMSFFSYKIALSFGIGLKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGT |
| Ga0208435_107644 | Ga0208435_1076442 | F044724 | PFMASTSSLTAGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS |
| Ga0208435_109705 | Ga0208435_1097052 | F052647 | MEILDFMPLIYISVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |