NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025030

3300025030: Soil microbial communities from Rifle, Colorado, USA - Groundwater B1



Overview

Basic Information
IMG/M Taxon OID3300025030 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0054845 | Ga0209518
Sample NameSoil microbial communities from Rifle, Colorado, USA - Groundwater B1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size548620193
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available8
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_71
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001484Metagenome / Metatranscriptome686Y
F008498Metagenome / Metatranscriptome332Y
F015419Metagenome / Metatranscriptome255Y
F016087Metagenome / Metatranscriptome250Y
F020197Metagenome / Metatranscriptome225Y
F033383Metagenome / Metatranscriptome177Y
F033485Metagenome / Metatranscriptome177Y
F037704Metagenome / Metatranscriptome167Y
F046735Metagenome / Metatranscriptome151Y
F050940Metagenome144Y
F057792Metagenome135Y
F060838Metagenome / Metatranscriptome132Y
F069002Metagenome / Metatranscriptome124Y
F071896Metagenome / Metatranscriptome121N
F073120Metagenome / Metatranscriptome120Y
F079599Metagenome / Metatranscriptome115Y
F084915Metagenome111Y
F094578Metagenome / Metatranscriptome106Y
F098345Metagenome103N
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209518_1000229All Organisms → cellular organisms → Bacteria75291Open in IMG/M
Ga0209518_1002507All Organisms → cellular organisms → Bacteria16990Open in IMG/M
Ga0209518_1008986Not Available6664Open in IMG/M
Ga0209518_1012106All Organisms → cellular organisms → Archaea5308Open in IMG/M
Ga0209518_1013994All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.4798Open in IMG/M
Ga0209518_1017158All Organisms → Viruses → Predicted Viral4110Open in IMG/M
Ga0209518_1033145Not Available2495Open in IMG/M
Ga0209518_1037819All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_72247Open in IMG/M
Ga0209518_1046841Not Available1902Open in IMG/M
Ga0209518_1052164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1747Open in IMG/M
Ga0209518_1052425All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium1740Open in IMG/M
Ga0209518_1061807All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1528Open in IMG/M
Ga0209518_1064530Not Available1475Open in IMG/M
Ga0209518_1067900All Organisms → Viruses → Predicted Viral1417Open in IMG/M
Ga0209518_1080674All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1235Open in IMG/M
Ga0209518_1082171All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1217Open in IMG/M
Ga0209518_1109874Not Available967Open in IMG/M
Ga0209518_1117422Not Available918Open in IMG/M
Ga0209518_1141844All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage790Open in IMG/M
Ga0209518_1144982Not Available777Open in IMG/M
Ga0209518_1186376All Organisms → cellular organisms → Bacteria → Terrabacteria group636Open in IMG/M
Ga0209518_1188525Not Available630Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209518_1000229Ga0209518_100022923F016087MEPFWNILNRLMDYIGTLAVAILFAMLAFSVGYHIGFSSGLDTKVTWVGEKYTMKVTGKATKR
Ga0209518_1002507Ga0209518_10025074F069002MNYAELAQAICDWSNKSSIDKVLPTVIRFGQRDLEDDLRIRPMEYHPTTANVAAAAALLALPSDYLEMIYLLLIKDGVRCPITVRSSPVEMYSTQISTTETGTPCRVSRIADDLVFDVLLDTAYTRDWCYYRRLPVLTASTTGTPIPNTNWWSENAEEALLMSCLNKLSMYVSGIPEGDKKKWADAALETREKLKFKEARETTGGNVLRSTPFSL
Ga0209518_1008986Ga0209518_100898616F084915MEELKEWLLNEINSICKDYHNESTYMWSKGYKKTCLETLDKINKIENEKSNTKK
Ga0209518_1012106Ga0209518_10121068F094578MEKERPKGPLKRLKSMYFALHCWKCKKFELPMEEYKKLCEDNIQKIIDALEIKEMRFREFNNIIKNTNFCKFEKRDFSSCPICEKCGIPQKRFW
Ga0209518_1013994Ga0209518_10139948F073120MQLSVTEYAKRLGVTRSAVLLQIKKKRLAKGVTCKKIGNTYSLSVRGQKTNKK
Ga0209518_1017158Ga0209518_10171583F071896MATQPKIQPLDADTKVRIINNSNGKIYWTQLNGRPITLLKIGAPATLPFIELENMAYTSDLIQTGDIYVQDKNVYNQLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGTKVKVTLIKEDEKANKQNQQKNEK
Ga0209518_1033145Ga0209518_10331454F016087METFWKILNKLMDYLGTLAVALLFAMLAFSVGYHIGFSSGLDTKVTWVGEKYTMKVTGKGIKR
Ga0209518_1037819Ga0209518_10378191F037704MVKAMQQEMLTGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR
Ga0209518_1046841Ga0209518_10468413F033383MWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK
Ga0209518_1052164Ga0209518_10521646F057792MASARENHITSINSLLTKYNANLDRHGMYHIGDYKFDTRAVNIKIFSGKIKIKSVPMMKVTLESLERSLKIYAKDDENXCMKFY
Ga0209518_1052425Ga0209518_10524254F060838MSFQYIEPTDEQKIVMQNFRDKYSSLARSLETVPSSRGLSLALTKLEESAFWLNKAITKN
Ga0209518_1061807Ga0209518_10618071F001484DAWMHPAQQQAYEQIGQAVSIIQKQPKEEGLDMYFEKMQMAGAPVRTSFNWDTTRIDFVSKKVWGRGEILPLGFYKTDGRNFFELRGASGGIAAADIFYQVLGTQFFVNNPAACSYIDNLLVPTGY
Ga0209518_1064530Ga0209518_10645305F098345LSFSASKLNILYLGKEIVYTGTGHSLRHYRGEIINIAYYSDLDLVPYAEIKLKLWNSRTVTKILPLSDIILVSSLKKTKTKKSKVAA
Ga0209518_1067900Ga0209518_10679001F079599MGFETLKNIIDFNREQARLHPEDEELENDLCPFDAWTLVENERGYKS
Ga0209518_1067900Ga0209518_10679003F046735VNLNVFERLLIRNIVPQIQGWNYAHLKEARELIEGLFTETEETDLQFEQDGTQVKWKVAKEDGTPIPQERDIPVSDGLKAKIGKFLKQLDKEERLGFEHMTLYGKFVETK
Ga0209518_1080674Ga0209518_10806741F015419MKYELKITDETGKVKLYDISRSSSDEKKSLNDFILEALQISEDKRKLPFMIQCPNGLEVHPSIKMKFENYGLSILGDKLEAMIVTWRD
Ga0209518_1082171Ga0209518_10821713F020197MPEIPFKMDYVLSVTAKHMKKSIDISIKKTEARFHEFIADEEKSQEVFKTLLSLHTLRKQIDDFQHKHSTIKGK
Ga0209518_1109874Ga0209518_11098741F098345MQRPKNIKNLIHSASKLNILYLRKEIVYTGTGHSLRPYRGEIINIAYYSDLDPVPYAEIKLKIWNSRTVTKILPLSEIVLVSSLKKTKTKKSKLVA
Ga0209518_1117422Ga0209518_11174222F033485MHIIVKGKHDHFGKTRSEQEMNMRKEWGHTITDEQLDKLKYLERKIKDANGSKKNFIRGQDIDEIK
Ga0209518_1141844Ga0209518_11418442F103138MKGSILLNYDADVKLESQQEQNRFLRNLLDQMGVPIHEIWTSDGLLSIEQKIKLRQTLTTYNIQVIDDLDGHMQVYVENQLVGEWHKCTYKLKRDLRELDPKKQLFIEMQVNCWSLFEES
Ga0209518_1144982Ga0209518_11449821F008498LATVTYKNQPAIHKTRGAIPLAGNEHLYTVKKVLWPKSIETFLPKLFVGRTLHVCCGKSLIGDIRLDLDPENNPDIICDASNMKLVIKDDEFDTVLCDPPYNGKFQWNHDLISELARVASKRIIFQHWFIPANKHGLYKKAQEKFHLTETYVWQGQAYFGRAQIISVFNVS
Ga0209518_1186376Ga0209518_11863761F050940DLERADLKGAKGMIKKMGVMVKNYYYKRFNAELKNNGYQFKIGLNKLRDDEIFASDDRVLCSYPGFHFASKSWCELNYPDRPLEALIYIPETAKINEPWAADGKASADMIEIISVINIATKEDLTEKFRKEG
Ga0209518_1188525Ga0209518_11885252F079599MGYETLKNIIDFNREQANLHQADEELENNMCPYDDWPLKENERGYRACEICGRLWLGSREVL
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