Sample 3300025028

Basic Information
IMG/M Taxon OID	3300025028 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067852 \| Gp0122839 \| Ga0208302
Sample Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025028 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0067852 | Gp0122839 | Ga0208302

Sample Name

Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	32341423
Sequencing Scaffolds	38
Novel Protein Genes	45
Associated Families	43

Dataset Contents

Total Genome Size

32341423

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → unclassified Dehalococcoidales → Dehalococcoidales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → unclassified Dehalococcoidales → Dehalococcoidales bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Ecosystem Assignment (GOLD)

Name

Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)	N/A	Depth (m)	143
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Caribbean Sea: Cariaco Basin

Coordinates

Lat. (^o)

10.847

Long. (^o)

-65.114

Alt. (m)

N/A

Depth (m)

143

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F000713	Metagenome / Metatranscriptome	925	Y
F002005	Metagenome / Metatranscriptome	605	Y
F003358	Metagenome / Metatranscriptome	492	Y
F003425	Metagenome / Metatranscriptome	487	N
F004772	Metagenome / Metatranscriptome	424	N
F005131	Metagenome	411	Y
F005319	Metagenome	405	Y
F008339	Metagenome / Metatranscriptome	335	Y
F008452	Metagenome / Metatranscriptome	333	Y
F008722	Metagenome	329	Y
F009368	Metagenome / Metatranscriptome	319	N
F009537	Metagenome / Metatranscriptome	316	N
F011351	Metagenome	292	Y
F011408	Metagenome / Metatranscriptome	291	Y
F011944	Metagenome / Metatranscriptome	285	Y
F013818	Metagenome / Metatranscriptome	268	Y
F016596	Metagenome / Metatranscriptome	246	Y
F016759	Metagenome / Metatranscriptome	245	Y
F016884	Metagenome / Metatranscriptome	244	Y
F021552	Metagenome / Metatranscriptome	218	Y
F023881	Metagenome	208	N
F024328	Metagenome	206	Y
F024807	Metagenome	204	N
F025720	Metagenome / Metatranscriptome	200	Y
F025847	Metagenome	200	Y
F027867	Metagenome	193	N
F034895	Metagenome	173	N
F037762	Metagenome / Metatranscriptome	167	N
F039343	Metagenome / Metatranscriptome	164	N
F039681	Metagenome	163	Y
F040680	Metagenome / Metatranscriptome	161	N
F044724	Metagenome	154	N
F047716	Metagenome	149	Y
F051200	Metagenome	144	N
F052647	Metagenome	142	N
F060975	Metagenome / Metatranscriptome	132	N
F068226	Metagenome	125	Y
F069047	Metagenome / Metatranscriptome	124	N
F070020	Metagenome / Metatranscriptome	123	Y
F077934	Metagenome	117	Y
F087431	Metagenome	110	Y
F101007	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208302_102800	Not Available	1882	Open in IMG/M
Ga0208302_103143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1665	Open in IMG/M
Ga0208302_103315	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1561	Open in IMG/M
Ga0208302_103647	All Organisms → Viruses → Predicted Viral	1407	Open in IMG/M
Ga0208302_103863	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
Ga0208302_104126	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1247	Open in IMG/M
Ga0208302_104239	Not Available	1214	Open in IMG/M
Ga0208302_104418	All Organisms → Viruses → Predicted Viral	1165	Open in IMG/M
Ga0208302_104699	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1095	Open in IMG/M
Ga0208302_105009	Not Available	1031	Open in IMG/M
Ga0208302_105066	All Organisms → Viruses → Predicted Viral	1020	Open in IMG/M
Ga0208302_105092	All Organisms → Viruses → Predicted Viral	1016	Open in IMG/M
Ga0208302_105139	Not Available	1008	Open in IMG/M
Ga0208302_105304	All Organisms → Viruses	979	Open in IMG/M
Ga0208302_105309	Not Available	978	Open in IMG/M
Ga0208302_105418	Not Available	959	Open in IMG/M
Ga0208302_105589	Not Available	929	Open in IMG/M
Ga0208302_106634	Not Available	797	Open in IMG/M
Ga0208302_107326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	733	Open in IMG/M
Ga0208302_107489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → unclassified Dehalococcoidales → Dehalococcoidales bacterium	719	Open in IMG/M
Ga0208302_107541	Not Available	715	Open in IMG/M
Ga0208302_108008	Not Available	679	Open in IMG/M
Ga0208302_108022	Not Available	678	Open in IMG/M
Ga0208302_108084	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	674	Open in IMG/M
Ga0208302_108265	Not Available	663	Open in IMG/M
Ga0208302_108471	Not Available	650	Open in IMG/M
Ga0208302_108555	Not Available	645	Open in IMG/M
Ga0208302_109327	Not Available	602	Open in IMG/M
Ga0208302_109501	Not Available	594	Open in IMG/M
Ga0208302_109745	Not Available	582	Open in IMG/M
Ga0208302_109833	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	578	Open in IMG/M
Ga0208302_109959	Not Available	571	Open in IMG/M
Ga0208302_110015	Not Available	568	Open in IMG/M
Ga0208302_110343	Not Available	553	Open in IMG/M
Ga0208302_110411	Not Available	550	Open in IMG/M
Ga0208302_110492	Not Available	546	Open in IMG/M
Ga0208302_110665	Not Available	537	Open in IMG/M
Ga0208302_110666	Not Available	537	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208302_102800	Ga0208302_1028002	F000713	MPLVKKRITLGAGLTSDQVLQGTTYEYVDPNTRIRVAAADATGTYSGEVVMDFTVNNSEFSSDCTVSGLVDGEPFGWTGNYLMNDMVTTGAVRNRPVITFTNNDTNSATIDVAIFISTI
Ga0208302_103143	Ga0208302_1031432	F037762	VSNWKNFERRVATRLRGKRIPITGRKGLDIDHPILDIECKYRKQLPAWLFKDAWRQANEGTGIPVIAVGEYNSSDIFTIISIDTLVKLLETEYNRCQ
Ga0208302_103143	Ga0208302_1031433	F101007	MSMIVRHPFRNFFSSPFDVDWNEAYKQAMIPEDGAVIVQREWVEKKYRVKHESDGTVKYIPFTEEVVSESD
Ga0208302_103315	Ga0208302_1033152	F011351	MELKKYIEVTSRLIPPLIDHIQLVEYRDKKLDFAYGMQEYHTSFRRMFKQIIRIIWRSGK
Ga0208302_103647	Ga0208302_1036472	F068226	MKKSRILRALKKCKSTDFNNDRVFSFIDEKGKQYFLAEQSHYMNIITQAVNTILDRVFDIIDNVELKKKILKTLNNDQK
Ga0208302_103863	Ga0208302_1038632	F008452	VDSPRSSGEKEKAKELVLVEWVDIISDDGWVTAEDCHLPTFYTVGWLEYQDEKVLKISNTLDFDDFTEEHKKKEKPIGYAITCFPAGCVTSLSFLNSRNGVS
Ga0208302_103863	Ga0208302_1038633	F009368	MVFHFDAAIQIMEEILTHELVNPEELYELLEYKTKDADSIQEERLWKMFQSFLVRANRLPADIIPFSPELRGPDT
Ga0208302_104126	Ga0208302_1041262	F025720	MAWKLKKEWEGKSIDSLNIPLDDLSQKQIAGLNESVRDALFVKAEPKKKKKYDSAK
Ga0208302_104128	Ga0208302_1041282	F087431	MKHVKWSQIPPLRGPNPQGLRKEVKQDTKKTEKLNGRQSNR
Ga0208302_104239	Ga0208302_1042392	F003358	MAKISEVIATIIGPDFDPVNVQGVADNVGSIVQKLNTTYQQQLTDEYEAFSLFMS
Ga0208302_104418	Ga0208302_1044181	F009537	SRVITLALFLIAQSVGAIWWASGLSSEVERLSGLVDKSDQFQTEIQRAVSGLDVLNFKVEELWKAIDKLEQADAALRDVDNEIMVQHESIFEWMAKGSPEQTAKGNPYGG
Ga0208302_104699	Ga0208302_1046992	F005319	MTDQTFAIIWILSFGLYFLIYTFWIPVKTQQRIENWLRDSESDETLLLALEVIVKRIREQTLIDFEEFMLPQARENLQKFWSGAMGNAAKELKKSEEGGQLALMSNMANELSSQPWYVQAAASKLMPIIQEAATKEGKPKPKRELGMGLRK
Ga0208302_104841	Ga0208302_1048412	F027867	MDLQKSKLVVIVPIVVSILAATFGSIKYIINLTETIEENKQQVMMLNKDIQIIFDKYAQDKEEFTREMFNVNARVTEVNAYFRALEEILRKTTDAVREQQWDIKDLSREVLGD
Ga0208302_105009	Ga0208302_1050094	F039343	MDLYRLNNFNYTFTATSSSVTLGDAVSAQCYAIIINASEPVFIKIDKHGGAATAGSCGYFIKDWPHYIRVSPGDRISGLRAGSSDSVVYITELTR
Ga0208302_105066	Ga0208302_1050661	F016596	MTNKYSLDKIRKSRNEFEALLRIYGISNLRLCKILEVNYLTSKKFIETPTNMRFIHAKRLADFIGLEIQDIVDTIVYDIK
Ga0208302_105092	Ga0208302_1050922	F039681	MTYELPDPTKLRIKPVYNTGDYGHDVVFPLLQSQTSNVQSLTPSTASFHQTLHDSARPIDEVAMFISNLDKCEQLHAGNDTNFDQTFLIQPDMSFFSYKIAVNMGFGLKVSAFTSGTVNLGNIHVTITEDGQGAGDTTIVDQIVDAGSSNLTATGEQIVAFHVDVIQPIKFTKARPIKVRIQTEVEETGTNTWQVGMLPVYPLIAPAVAKQWLLSQVEVHAHASLDHAFPIWRDETNQEKMDYSGCSPDGCNSAMNGIGSV
Ga0208302_105139	Ga0208302_1051392	F034895	MITLLEQLRPEVIEALEKNRDKYDYPVTKLYNSLDNKHLYSELSVGEMRDLTLWADVDERTWDYVDWKYGIKLFVDTIDAKR
Ga0208302_105139	Ga0208302_1051393	F013818	MGDSVKKYHEMKQDIVDKESLYLCSEIEKALERIINYDDGMLDDKLFTKIKKPAIKLLKEWHL
Ga0208302_105304	Ga0208302_1053042	F002005	MKDINNYPKTFFITYFARTHNGEAIKNGGKFITRKASAQKPNGVLGKIFTDKNGVDRFIYWDFDAENKKGGFGDWRHATSHWTIKAI
Ga0208302_105309	Ga0208302_1053094	F008339	MIYLIIRKYQYKNSEPTYRVEKWAKTVKEANQFLSALSLLDDDQWTMFFIVPAQENPALVLTEEVA
Ga0208302_105418	Ga0208302_1054182	F069047	MPIQRCNLKSGKKGWKWGKSGKCYPTREGALKQMRAIKASQKRG
Ga0208302_105589	Ga0208302_1055892	F052647	MEILDFMPLIYVSVILTGAYFIGKLLLNHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNSPDMYVKVLQELEHLKQTGADEKQMSSLQRKADLLKTVVENQEIINLAGKPLFRILGKFVGNIGR
Ga0208302_105689	Ga0208302_1056892	F040680	MQTDVKQTIAVAATAQLQKYVRTTATNITKARIMAISAQASGANGSVKIYDSVAGTTASDLVAELKFGTADGEWTHFYVPGQGIYCDTGMYAVLSNCDF
Ga0208302_106634	Ga0208302_1066341	F011944	MASIVGKALRGFGRALKRGKGLRPSGTGAIKSVKPGVGGLKASSTVKEGLEKSAAEGVRKFGRPHTTKVLSGLKGKKTMGSIVKAAGD
Ga0208302_107326	Ga0208302_1073261	F047716	SDANRGLIHSGLLEKGFGVGRQGQAQHLANLQNQATFVPNLQAGLGQQFGAMGTMENAYAQALQNQLAKSNQLAMNLPLDRIQQAANIFGGVAGLVPGSPVQPFQPNPTYAGIGAFADFQNLMGARTG
Ga0208302_107489	Ga0208302_1074891	F016884	VGADTANLIQTLGFPVVAAAAAGIFGYKIVFYVLRDLSSEVKSLYEIIVKLIDRLNGHDKETNKLSKEIAMLRVEVAALYKCMGVSPKRPSKPRQEE
Ga0208302_107541	Ga0208302_1075412	F024328	MTITELEKEIIKAIKIESELPLASQEPYKDLMKFVKKLFKEYRE
Ga0208302_108008	Ga0208302_1080081	F044724	ASTGALTAGQTYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTNSLTPMLDSVECNTPLVLGATQQFRIYGQNFIANTVANRLGLGLHYSESQTTLKEKFYDMPTNETNTGLTATSTVGENLTINDGVFLEDIYPTVVSGVVTASESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVSMAKQPHYTNIHMPMKSSCLISHSYVQDEVLTATGNFTITYGYT
Ga0208302_108022	Ga0208302_1080222	F024807	MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEADALAFHLDSFVSDMDSTRKPQPSAEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED
Ga0208302_108084	Ga0208302_1080842	F077934	EEAEGVSMNSKWGWYNTLFALSNNILDIDKITKLPIMEVLTYLAYRQDYGNKQRNNYDNF
Ga0208302_108265	Ga0208302_1082651	F000479	MSKSVNILEVLEKAHQSPASLGKKAKQQIIDTYGRALNLQKVISDFIKVNRNLVLDMSVSENANLLHGKDYTIHVSQKLSAKIDTQLVKEKLGELEYHKCKVPTQYKQIQAMPINEGQVKKDKKHTIDEVADFRLSA
Ga0208302_108471	Ga0208302_1084711	F051200	MSTYPVDIKAKRITSTAANQVIFSGPARILGFSANCTAGAGSIDLEDNGTSLAVWGTPDGSSAPFVYNVTLPGTGIKCNTNPTVSLTTIADVTFYYA
Ga0208302_108555	Ga0208302_1085552	F004772	MTTNVKVAQNVSSDGAIITGFRYIDTNTTLGDEGTGSDPSPSTTRVLAIHTYSTLAGEIVLSGSKQITNKSAKGTAIRYRVGATDSNDQYIGDMGVGVFGIVSVATSGTGT
Ga0208302_109327	Ga0208302_1093271	F005131	MKDIKKKLVKQVKKARPSLAKEIKDMPMKDFRALWFVVQQGLKIKKANKLN
Ga0208302_109501	Ga0208302_1095011	F060975	MGKTVRRNPVAKNSARFNKPKTIRDKKKDFYRPDSKREFEEAIEDMGFDEYNRKDAIITQYQDDLARSQEDGWPYED
Ga0208302_109745	Ga0208302_1097452	F011408	MDYYDPTDVNVEELIKRVRVGRSTEELIRTPTGSSLVSRATQDYREGIEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARHRDTGEI
Ga0208302_109833	Ga0208302_1098331	F016759	LQDVVTGLTFIQLNIGNTILDMYNSPDPAAAADFYQYVLQKNSISTGRTFFSTAMSTTSAGRAAVGPIRLAAGQMQLEGTPVGAAAPINDQNVVIKFSNGF
Ga0208302_109959	Ga0208302_1099592	F021552	MVVLLVNWRQCTSMIRHLIGKSLSSCTNDILNGDVNEEEVLLICTSTKHPFNDPNHFYDMRYFDSVQEAELLQRLYKQGRIHQPRMLSDTYNYGKEGPLFPYDNYRHKVWYSIKDQALTDLEDKPEEYSEELEDAMIKILGGPDYNDGADYHLRKKESSE
Ga0208302_110015	Ga0208302_1100152	F023881	MATRNKTKFKNNWFTKLKKPKGVSESYNGSYISGKLGGVKVGNESLKKYYSKIINGSGKSSI
Ga0208302_110343	Ga0208302_1103432	F003425	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTTYSGTNVQDFCGDDSYIGREKGFESYHKELKD
Ga0208302_110411	Ga0208302_1104113	F070020	VSFIVGIARIAHWFLIPFLVVWMAIAPNDMLPTCLSDAKAHIAEQFRGS
Ga0208302_110492	Ga0208302_1104921	F052647	MEILDFMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNAPDMYVKVLQELEHSKANGADEKQMSSLQRKADLLKIAVENQEIINLAGKPLFRVLGKFVGNIGR
Ga0208302_110665	Ga0208302_1106653	F008722	MTKGEALQAVYVACEYYDMVHDTGDEEQNKEDFDYVWEGYDRLV
Ga0208302_110666	Ga0208302_1106661	F013818	MSDSVKKYHEMRQDKIDRESLYLCSEIEKALDRIIGYSDNDLDDRMFTQIKKPAIKLLKEWHL
Ga0208302_110666	Ga0208302_1106662	F025847	MDKRINRLFNNFAIATLFFLLGTYFTYYKIDQRLWNETTNKAWDIEARALNFPKKSCYNWQDIEIIIFGEIQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025028: Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences