NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025012

3300025012: Soil microbial communities from Rifle, Colorado, USA - Groundwater C1



Overview

Basic Information
IMG/M Taxon OID3300025012 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0054701 | Ga0209727
Sample NameSoil microbial communities from Rifle, Colorado, USA - Groundwater C1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size379191083
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
Not Available13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_71
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008189Metagenome / Metatranscriptome337Y
F008498Metagenome / Metatranscriptome332Y
F016087Metagenome / Metatranscriptome250Y
F033383Metagenome / Metatranscriptome177Y
F037704Metagenome / Metatranscriptome167Y
F057792Metagenome135Y
F064603Metagenome / Metatranscriptome128Y
F065251Metagenome / Metatranscriptome128Y
F070639Metagenome / Metatranscriptome123Y
F071896Metagenome / Metatranscriptome121N
F091086Metagenome107Y
F094578Metagenome / Metatranscriptome106Y
F095460Metagenome / Metatranscriptome105Y
F097229Metagenome / Metatranscriptome104Y
F097603Metagenome / Metatranscriptome104Y
F098345Metagenome103N
F100657Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209727_1000074All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales125487Open in IMG/M
Ga0209727_1000490Not Available43090Open in IMG/M
Ga0209727_1000707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes34129Open in IMG/M
Ga0209727_1001760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes16872Open in IMG/M
Ga0209727_1003782Not Available9509Open in IMG/M
Ga0209727_1007569Not Available5510Open in IMG/M
Ga0209727_1008010All Organisms → cellular organisms → Archaea5241Open in IMG/M
Ga0209727_1010884Not Available4131Open in IMG/M
Ga0209727_1010929Not Available4117Open in IMG/M
Ga0209727_1016928All Organisms → cellular organisms → Bacteria → Proteobacteria2908Open in IMG/M
Ga0209727_1030667Not Available1857Open in IMG/M
Ga0209727_1037042All Organisms → Viruses → Predicted Viral1618Open in IMG/M
Ga0209727_1040602Not Available1512Open in IMG/M
Ga0209727_1040764Not Available1508Open in IMG/M
Ga0209727_1050353All Organisms → cellular organisms → Archaea1288Open in IMG/M
Ga0209727_1054501All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Gottesmanbacteria → Candidatus Gottesmanbacteria bacterium GW2011_GWB1_49_71213Open in IMG/M
Ga0209727_1070216Not Available1002Open in IMG/M
Ga0209727_1078771All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon919Open in IMG/M
Ga0209727_1083213Not Available883Open in IMG/M
Ga0209727_1097888Not Available781Open in IMG/M
Ga0209727_1114136Not Available694Open in IMG/M
Ga0209727_1119213Not Available671Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209727_1000074Ga0209727_1000074180F016087MDYIGTLAVAILFAMLAFSVGYHIGFSSGLDTKVTWVGEKYTMKVTGKATKR
Ga0209727_1000490Ga0209727_100049016F097229VKVCSRQCPTCIYRPDSLFDLKKLEAQIADPYMAGFFKGHRVCHHTKDACCRGFWNKHKDSFALGQVAQRMNVVIFVAPGG
Ga0209727_1000707Ga0209727_100070717F057792MASTARENHIASINALLIKHGAVLDRYGTYRIGDYKFDTRAVNLKIHHGKIKIKSTPMMKVTLESLERLLKIYSTKESE
Ga0209727_1001760Ga0209727_100176016F057792MTSTAREKHIANINSLLIKHGANLDRHGMYHIGKYKFDTRKVNLKITSNDFKILSISMSKLTLEEFEKRLKIYVAKEETK
Ga0209727_1003782Ga0209727_100378212F100657MQTITVEYSTSVFTPAGWRNETVTATLELISPKRGRVLCVTDIGGNGTSGYGSRTGAKRQRYHVGGVAMREEGKIKNLSACCVL
Ga0209727_1007569Ga0209727_100756913F098345MQKPKNIKNLIHSASKLNILYLGKEIVYTGEGHSLKPYRGEIINIAYYSDLEPVPYAEIKLKIWNSRTVTKILPLSDIVLVSSLKKTKTKKSKLAA
Ga0209727_1008010Ga0209727_10080104F094578MKKERPKWPLQRLKGMYFAMHCWKCKKFELPMEEYKIRCENNIQKIIDDLNVKEMKFKEFNEIIKNSTFCEFEKRDFSNNCPICKKLDVITTDFN
Ga0209727_1010884Ga0209727_10108842F016087METFWKILNKLMDYLGTLAVALLFAMLAFSVGYHVGFSSGLDTKVTWVGEKYTMKVTGKGIKR
Ga0209727_1010929Ga0209727_10109292F095460MNSIGDLIDKLIIENIKIFNLRENMHSKKLSDEGYVTMSNQMNLLNKNRSTISNFLDDKIDRVVDGKEKNTFLNIIKTYEGKK
Ga0209727_1016928Ga0209727_10169286F100657MTQTTIMKVITISYATSVFTPAGWRAEVVKAQAEQISPKRCRVLCVLDIGGNGNSGYGSRTGAKRQAYHVGGVARREEGKIKNLSACW
Ga0209727_1030667Ga0209727_10306674F008189MDYQTEFKRLQEGGNFWKPKASQYKVKALTELEEAEPYIRKGKEGKEDEISPQGKIKILVNGEEKTWTFGKGLTLASTYGQLVQLATQHDNKLLGVEFSVVVKSDGTKNDYTIVN
Ga0209727_1037042Ga0209727_10370426F091086MQDIINTIKISNNSNEVKQILKPLKIKEVVKIARGLGICIRGNENKTEIISNIILGIMK
Ga0209727_1040602Ga0209727_10406022F064603MTIKRFDYRSSKEDIFYKVIYPIYAREFLYGSKYENFALTVSANFILNPEQWEYILEHWEQKESILTLETK
Ga0209727_1040764Ga0209727_10407642F070639MNILADKIVELLREHLAESRQVKRFYLGNPIELAVSELPAIFVQPLRKSVEQLDNVYDQMTCDFIIGVCVDPAKYQRKDLNEGTAERFLMEIEGGRNADGTPIEQSVTYVMRNHFTLENTAVYQEQDTVWGEREMTGGVAKEIHMYFTIKVKIRNTS
Ga0209727_1050353Ga0209727_10503531F065251MYLRSFIKGGKKYYYVARAVRTGKRVIQKYVLYIGTADTIYEKLKNLKKK
Ga0209727_1054501Ga0209727_10545014F037704DLLTAMSSVREMVKAMQQEMLTGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR
Ga0209727_1070216Ga0209727_10702161F033383AIYEEKQGHTAVIRQPQDEKPIYGTITDIDVDCIHSQIGTTAIHERRPKIMWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK
Ga0209727_1078771Ga0209727_10787712F094578MIEEEKPKWSLQRLKGMYFAVHCWKCKRFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNDIIKGATFCKFDKRDFSNNCPICKKLGIKF
Ga0209727_1083213Ga0209727_10832133F100657VTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL
Ga0209727_1089907Ga0209727_10899071F097603NEDIKHGSVSRDSGFSVQNQMYSSSTTPDFKIHEVFEWYRPFEDRYSVMVNDVPILKKASIPFPFDFKETPFIAIRYLSLPGEFEGIGIPLILENSQLMLNMMKNQRLDATTLNIHKMWIVNPLANINKADLVTRPFGIIWSPDPNGVREVQFSDIKQSAFQEERLLKDDMRYASGVDDFSMGAGGAASSATEVRHLRESTLERVRLFVNHLGDGYAQLLRYWISLWRQFGTKKITIRILGEDGNYTFPIIEKDDLRGEFDFRATILPSIAGQNEVE
Ga0209727_1097888Ga0209727_10978881F008498LATVTYKNQPAIHKTRGAIPLAGNEHLYTVKKVLWPKSIETFLPKLFVGRTLHVCCGKSLIGDIRLDLDPENNPDIICDASNMKLVIKDDEFDTVLCDPPYNGKFQWNHDLISELARVASKRIIFQHWFIPANKHGLYKKAQEKFHLTETYVWQGQAYFG
Ga0209727_1114136Ga0209727_11141361F071896MVTKKIQPLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQEKNVFDTLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGTKVKVTLIKEDEKANKQNQQKNEK
Ga0209727_1119213Ga0209727_11192131F033383DVELVHSQMPITQYHNGNPKFMWMHGEPLSSVGNGVSMKAIVDLAPVMDAFIAMRKDELIVWNSIKRTYYVRKGIDLDVYSPLEGVTERLSGEPAVLYVENWRGQRNPLYLCVAMQEVWKRYPNARLHLYNLTDKRMKDTFSALVQNNKWWTFVRSLQGPVQDVNTLYNRVDMVVSGLYPLYARGIEAFGAGKAFIGPGYREDGYPWTCELQPESIAATIIKC
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