NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025011

3300025011: Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025011 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0054800 | Ga0209000
Sample NameGroundwater microbial communities from Rifle, Colorado, USA - Groundwater D2 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size252788029
Sequencing Scaffolds28
Novel Protein Genes28
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1
Not Available9
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus tianjinensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048726Metagenome / Metatranscriptome147Y
F050465Metagenome145Y
F057792Metagenome135Y
F071896Metagenome / Metatranscriptome121N
F084915Metagenome111Y
F091086Metagenome107Y
F098345Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209000_1000594All Organisms → cellular organisms → Bacteria32333Open in IMG/M
Ga0209000_1000671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes28747Open in IMG/M
Ga0209000_1001075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes19208Open in IMG/M
Ga0209000_1001106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18951Open in IMG/M
Ga0209000_1001347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes16036Open in IMG/M
Ga0209000_1003826All Organisms → cellular organisms → Bacteria7313Open in IMG/M
Ga0209000_1003872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7250Open in IMG/M
Ga0209000_1003873All Organisms → cellular organisms → Bacteria7250Open in IMG/M
Ga0209000_1004223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6807Open in IMG/M
Ga0209000_1005944All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales5286Open in IMG/M
Ga0209000_1006309Not Available5035Open in IMG/M
Ga0209000_1009441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3705Open in IMG/M
Ga0209000_1019789All Organisms → Viruses → Predicted Viral2064Open in IMG/M
Ga0209000_1020769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus tianjinensis1985Open in IMG/M
Ga0209000_1021608All Organisms → Viruses → Predicted Viral1920Open in IMG/M
Ga0209000_1024473Not Available1733Open in IMG/M
Ga0209000_1025838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1657Open in IMG/M
Ga0209000_1026513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1622Open in IMG/M
Ga0209000_1035693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1266Open in IMG/M
Ga0209000_1035843Not Available1261Open in IMG/M
Ga0209000_1037113Not Available1225Open in IMG/M
Ga0209000_1042802Not Available1086Open in IMG/M
Ga0209000_1066753Not Available749Open in IMG/M
Ga0209000_1071059Not Available712Open in IMG/M
Ga0209000_1081125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes639Open in IMG/M
Ga0209000_1083679Not Available621Open in IMG/M
Ga0209000_1091450Not Available565Open in IMG/M
Ga0209000_1099873All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209000_1000594Ga0209000_10005941F048726NFIGRSLTANQAEQNVELNMAFINLIVNDSASVVTLSFDIASTSASGNLMVLKAGEARENVAVPFGKLYYKAAADTSALRIEGLAKAEF
Ga0209000_1000671Ga0209000_100067128F091086MLTRCKIMQDIINTIKLSNNPNEVKQILKPLKIKEVIKVAKCLDICIRGNENKTEIINNIILGIMK
Ga0209000_1001075Ga0209000_100107526F098345MQKPKNIKNLSHSASILNSLYLGKEIVYTGTGHSLRPYRGEIINIAYYSDLEPVPYAEIKLKIWNSRTVTKIILLSDVVLVSSLKKTKTKKSKLAA
Ga0209000_1001106Ga0209000_100110620F071896MAKTNKSNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLIKEDEKANKQNQEKNK
Ga0209000_1001347Ga0209000_10013472F048726MATNFIGRSLVANILEQNVTLDMSFINLIVNDSTSTVTLSFDVASASAASNLMVLKAGESRKNIAVPFSKLYYKAVADTSYLRIEGLAM
Ga0209000_1003826Ga0209000_100382611F057792MASTARENHIAQINSLLVKYGATLDKWGMYHIGKYKFDTRKVNLKITVNDFKIVSTSMSKLTLEEFEKRLKIYVARESESKXADTTNFSKK
Ga0209000_1003872Ga0209000_10038721F048726FIMATNFIGRSLTANILEQNVELNMSFINLIVNDSANVITLAFDVTATTNIMTLKAGEVRKNIAVPFGKLYYKATADASALRIEGLAKAEF
Ga0209000_1003873Ga0209000_10038737F048726MTNYVGRSLVANQAEQNVELNMAFINLIVNDSASVVTLSFDIASASAGGNLMVLKVGEARENVAVPFGKLYYKAAADTSALRIEGLAKAEF
Ga0209000_1004223Ga0209000_10042236F071896MARKDIKLDNINYTIDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTKX
Ga0209000_1005944Ga0209000_10059447F071896MVTKKIQPIDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVYDQLGLNVKYEDIKLHTQLKLMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDTIEDGAKVKVTLIKEDEKANKQNQQKNDK
Ga0209000_1006309Ga0209000_10063098F084915MKELKEWLINEINSINKDSHNESTYAWAKGFKKALLEVLDKINKIENEKSNTKKX
Ga0209000_1009441Ga0209000_100944111F057792NEYNIKILKDVLIMTSAQRENHIAQINNLLMKYGATKDRWDMYHIGNYKFDTRQINLKIYSGKVKIRSTPMMKIELDSLEELLKIYTKESEK
Ga0209000_1019789Ga0209000_10197891F098345KNKFMKEGIPMQKPKNMKNLTHSASRLNILYLGKEIVYTGEGRSLRPYRGEIINIAYYSDLDPVPYAEIKLKVWNNRTVTKIMKLSDVVLVSSLKKTKKSKIAA
Ga0209000_1020769Ga0209000_10207693F071896MAKTTQSKNQTNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQIGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLAILDAEELKEEITKLPDGNKELLAELAIGDFDNLRGSVINTIEEETKVKISLMKEDEKANKQNQEKNK
Ga0209000_1021608Ga0209000_10216087F057792MASTARGLHISAINALLVKHGANLDRYGTYRIGDYKFDTRAVNLKIHHGKIKIKSTPMMKITLESLDKLLKIYAMKENESKXADTINFSKK
Ga0209000_1024473Ga0209000_10244731F098345THSASKLNILYLGKEIVYTGLDHTLRPYRGEIINIAYYSNLNPVPYAEIKLKIWNNKTVYKILPLSEVVLIASRKSKSKKSIAA
Ga0209000_1025838Ga0209000_10258381F048726ILEQNVTLDMSFINLIVNDSTSIVTLAFDVASASASGNLMVLKAGESRKNIAVPFGKLYYKAVADTSYIRIEGLAKAEF
Ga0209000_1026513Ga0209000_10265131F071896MATKKTQPLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKTVFDTLGLNVKYEDIKLHTQLKSMLANLSSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVV
Ga0209000_1035693Ga0209000_10356933F057792MTTKSNTRELHIASINNLLVKHGANLDKYGVYHIGDYKFDTRAVNLKIHHGKIKIKSTPMMKVTLESLDKLLKIYAMKESESKXADTINFFKR
Ga0209000_1035843Ga0209000_10358432F057792MASTARENHIAQINSLLIKYNATLDRFGMYHIGKYKFDTRKVNLKITVNDLKILSTSMSKLTLEEFEKRLKIYVARENESK
Ga0209000_1037113Ga0209000_10371131F057792TQRENHIAQINNLLMKYGATKDRWDMYHIGNYKFDTRAVNLKIYSGKVKIRSTPMMKIELESLEKLLKIYAKES
Ga0209000_1042802Ga0209000_10428021F057792MASTAREKHIASINELLIKYGANLDKYGVYHIGNYKFDTRAINLKIFSGKVKIKSTPMMKITLESLEKSLKIYVKEVESXXIKQHQNTTAYPSIIQLKE
Ga0209000_1066753Ga0209000_10667532F071896IINNSNSRIHWIQLNGRPINLMKIAAPATLPYIELENMAYTSDLIQTGDIYVPDKKVFDALGIINLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIEDETKVKISLMKEDEKANKENQEKNKK
Ga0209000_1071059Ga0209000_10710591F098345IKNLTHSASKLNILYLGKEIVYTGEGHSLKPYRGEIINIAYYTDLEPVPYAEIKLKIWNSRTVTKIMKLSDVVLVSSDKVKKAKNKKSKLAA
Ga0209000_1081125Ga0209000_10811252F057792IMTSAQRENHIAQINNLLMKYGATKDRWDMYHIGNYKFDTRQVNLKIYSGKVKIRSTPMMKIELESLEKLLKIYSKEK
Ga0209000_1083679Ga0209000_10836793F084915MKELKGWLINEINSINIDYYNESVYMWNKGFKKALLETLDAI
Ga0209000_1091450Ga0209000_10914501F098345XKKVNQMQRPKNIKNLTHSASKLNILYLDKEIVYTGTNHSLRPYRGEIINIAYYSDLEPIPYAEIKLKIWNSRTVTKILPLSDIILVSSLKKTKTKKSKLVA
Ga0209000_1099873Ga0209000_10998731F050465NVMNLDPFIVANATLFFLAVVLIVEYVIRRRKLGRDSAQNRQKQQQFAAYSAELKNLKTELARKSEIAEKLPQITKRLTEKLPSEAYPAIAVRSIKDFFHANKVGYFAPVEGSSDYTLVVGTGFPPDWPGKVRIHRSEGILGMALQNKVVVSRMDPHSSSGRRSSH
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