NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025009

3300025009: Soil microbial communities from Rifle, Colorado, USA - Groundwater F1



Overview

Basic Information
IMG/M Taxon OID3300025009 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0054403 | Ga0209416
Sample NameSoil microbial communities from Rifle, Colorado, USA - Groundwater F1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size229619307
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales3
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026738Metagenome / Metatranscriptome197Y
F029285Metagenome / Metatranscriptome189Y
F048726Metagenome / Metatranscriptome147Y
F071374Metagenome / Metatranscriptome122Y
F071896Metagenome / Metatranscriptome121N
F071990Metagenome / Metatranscriptome121Y
F079599Metagenome / Metatranscriptome115Y
F084915Metagenome111Y
F096738Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209416_1000686All Organisms → cellular organisms → Bacteria31619Open in IMG/M
Ga0209416_1000719All Organisms → cellular organisms → Bacteria30724Open in IMG/M
Ga0209416_1001200All Organisms → cellular organisms → Bacteria19445Open in IMG/M
Ga0209416_1001252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes18759Open in IMG/M
Ga0209416_1002004Not Available12183Open in IMG/M
Ga0209416_1002655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes9323Open in IMG/M
Ga0209416_1004136All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales6292Open in IMG/M
Ga0209416_1005558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales4875Open in IMG/M
Ga0209416_1007484All Organisms → cellular organisms → Bacteria3827Open in IMG/M
Ga0209416_1013467All Organisms → Viruses → Predicted Viral2400Open in IMG/M
Ga0209416_1014075Not Available2322Open in IMG/M
Ga0209416_1018682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1855Open in IMG/M
Ga0209416_1022087Not Available1622Open in IMG/M
Ga0209416_1055692Not Available760Open in IMG/M
Ga0209416_1085431Not Available526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209416_1000686Ga0209416_10006865F071374MSEQEAIAWLKGERSMTNTVPQHPFETWQSRIAEADAFMTQQAYWIVKAHNELLIR
Ga0209416_1000719Ga0209416_10007195F071990MAEPTTRFRKIPLATATTALDTAAERLAAIASEAIVSTGSGNEADFGTVDISGGAANSGVQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTENYVANAVVGSYTWATMPETEPAQNVWPTDEGVDMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSYKYSYS
Ga0209416_1001200Ga0209416_10012005F026738MADRAVTLSGSFQRVTLGATTKLLGAGRYEISGVTRKTVDASEFGVDIDIYEFGSADGGTITLSDVSYDPTDPMQNYLRSCVQSGIKMDNGATSGIRFWINSTSYLSVGTSGNILFTNAGKVSADRNGMAKTDFSGQVSGAFMYLT
Ga0209416_1001252Ga0209416_10012521F048726MANNFIGRSLVANLAEQNVELNMAFINLIVNDSANTITVTFDEATTSSNVMVFKAGEQRTNIPVPFEKLYYKASADT
Ga0209416_1002004Ga0209416_10020044F084915MKELKEWLINEINSINKDSHNESTYAWAKGYNKACLEILDKIKMIEKDKLNTKK
Ga0209416_1002655Ga0209416_10026552F071896MVTKKIQPLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVFDALGLNVKYEDIKLHTQLKTMLANLNSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDAIEDGTKVKVTLIKEDEKANKQNQQKNDK
Ga0209416_1004136Ga0209416_10041362F048726MTTNFIGRSLTANEIEQNVELNMAFINLIVNDSINIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKAAADASAMRIEGLAKAEF
Ga0209416_1005558Ga0209416_10055586F071896MAKTTQSKNQSNDFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFNSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKTK
Ga0209416_1007484Ga0209416_10074846F029285MKNHADYSLYKCPYSHIEKECGHELNGPEGYERTYGVWCPCGFRGPVFCLDPEELKLELK
Ga0209416_1013467Ga0209416_10134674F071896IQSKNQSNEFNTIDPDRKVRIINNSNSRIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSNLIQIGDIYVPDKNVFDSLGIINLKHEDIKLHSELKSMLANLNAEELKEEIQKLPDGNKELLAELAIDEYSNLRGSVIDTIEDETKVKVTLIKEDERANKENQNKNK
Ga0209416_1014075Ga0209416_10140753F071896MAKTTQSTTKSNEFNTIDPDTKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDALGIINLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQDKNKK
Ga0209416_1018682Ga0209416_10186821F071896MAKTTQSKNQSNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIENET
Ga0209416_1022087Ga0209416_10220872F048726MTNFIGRSLVANEIEQNVELNIEFINLIVNDSANIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKANVDASAMRIEGLAKAPF
Ga0209416_1055692Ga0209416_10556923F079599MGYETLKNIIDFNKEQANLHQADEELENDMCPYDAWPLKENEWGYRACAICGRLWLGNREVL
Ga0209416_1085431Ga0209416_10854311F096738MSIKRVSIYDMDGTIVCSLHRYRTIGDKIDLAYWRENEFRAMEDSLLPMADQYKADLLDPECYTIIATARV
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