| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024985 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114290 | Gp0111067 | Ga0208392 |
| Sample Name | Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 153600074 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Lake Washington, Seattle, Washington | |||||||
| Coordinates | Lat. (o) | 48.3807 | Long. (o) | -122.1599 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012885 | Metagenome / Metatranscriptome | 276 | Y |
| F060098 | Metagenome / Metatranscriptome | 133 | Y |
| F063813 | Metagenome / Metatranscriptome | 129 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208392_1044193 | Not Available | 775 | Open in IMG/M |
| Ga0208392_1055734 | All Organisms → cellular organisms → Bacteria | 656 | Open in IMG/M |
| Ga0208392_1072460 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 542 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208392_1044193 | Ga0208392_10441932 | F012885 | MPYRIRWEGHGVYRRFFGVITLAEFREANKEMRSDVRYEGIRYIISDYLEAEPGPDITERDLRAQAEIERLRFYDSPDTVQAMVGTNPKIVAYVKYYESLRVSPYCLGDFTTVAAARQWIASNPRMGWIRPPTSVTSAATAPHS |
| Ga0208392_1055734 | Ga0208392_10557342 | F063813 | PARYPITKTPINDFLTNAEVLPIIQKDALMSLVQWSQAHGQKLKPTQLEANAEPLAKPSPSSKKSSHQSGSRAGSTPIDETKSIERGLS |
| Ga0208392_1072460 | Ga0208392_10724602 | F060098 | MDAPTLKRAASAVTMGLGGLLWLAAILFMAQTAQNSEQFSRLH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |