| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024978 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118793 | Gp0095080 | Ga0209941 |
| Sample Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 279004683 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
| Type | Engineered |
| Taxonomy | Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Africa: Cape Town | |||||||
| Coordinates | Lat. (o) | -33.936637 | Long. (o) | 18.478905 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000135 | Metagenome / Metatranscriptome | 1961 | Y |
| F007832 | Metagenome / Metatranscriptome | 344 | Y |
| F025775 | Metagenome | 200 | Y |
| F069970 | Metagenome | 123 | Y |
| F074177 | Metagenome | 120 | Y |
| F082508 | Metagenome | 113 | N |
| F099558 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209941_1000365 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 62052 | Open in IMG/M |
| Ga0209941_1000907 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 26147 | Open in IMG/M |
| Ga0209941_1001706 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 14172 | Open in IMG/M |
| Ga0209941_1002259 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 11042 | Open in IMG/M |
| Ga0209941_1047645 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans | 972 | Open in IMG/M |
| Ga0209941_1074535 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 706 | Open in IMG/M |
| Ga0209941_1090409 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani | 617 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209941_1000365 | Ga0209941_100036553 | F074177 | MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS |
| Ga0209941_1000907 | Ga0209941_10009079 | F007832 | VLFLADIFPGGGSPVADVFAIAIALFLFALLFWVIDLIDRI |
| Ga0209941_1001706 | Ga0209941_100170612 | F069970 | MTTHLTNAIKVGDRVIFDISWVEKFKAETSSSDKAVKQYQQLVLGGIDQAGVVKELGGNLTTVAYPDGWVLPVPTKYLIVLQSREDILMVI |
| Ga0209941_1002259 | Ga0209941_100225911 | F069970 | MNTLHPKQAIKTGDKVIFDTDKIEVFKAETGGPDEAIRQYRQLVLGGVDQIGIVKEFGNNLTTVSYPDGWDLPVPTKYLIVLPEES |
| Ga0209941_1003368 | Ga0209941_100336811 | F000135 | MWFQLRSPELAEEFEDLMAGDRDIVRGSLDTVSEWRLARPADVPGQAIGQADYVLIVEFVGIERFEQQASERVESLADDLDHLVSSRGMLVLRSVF |
| Ga0209941_1047645 | Ga0209941_10476452 | F025775 | MKQFLTFQGFPMVVVVALIVWSWISILSVVIGSLF |
| Ga0209941_1074535 | Ga0209941_10745351 | F099558 | MTLSNTAYSLVPSIARRDRSTAGRLLSAILSQWPERTRGSPPLPNYLRRDIGLEPLEPSRKYWDIR |
| Ga0209941_1090409 | Ga0209941_10904091 | F082508 | GSALASSQSAERIEQTASMSSGSPRVRPLPRPGSRPHNPSVTAAPAPEVDTDEQLALVSQDHLRSLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSATGRKTHEDHFGIIDRVLWPVVNDGRTER |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |