| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024253 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0134237 | Gp0304276 | Ga0261704 |
| Sample Name | Lab enriched microbial communities from a contaminated site in Ontario, Canada - KB1TCB_rich_medium |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Toronto |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 77393267 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5 |
| All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Toronto, Ontario | |||||||
| Coordinates | Lat. (o) | 43.65699737 | Long. (o) | 79.39033177 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040026 | Metagenome | 162 | Y |
| F088079 | Metagenome / Metatranscriptome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0261704_104950 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 166424 | Open in IMG/M |
| Ga0261704_116931 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 82307 | Open in IMG/M |
| Ga0261704_123484 | All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum | 571 | Open in IMG/M |
| Ga0261704_136281 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 97167 | Open in IMG/M |
| Ga0261704_139916 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 72462 | Open in IMG/M |
| Ga0261704_140683 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 23972 | Open in IMG/M |
| Ga0261704_153023 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 140276 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0261704_104950 | Ga0261704_10495087 | F088079 | MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMFVGQNCTFCTSRLGNLAPNPYRMLTRLDVFVHICEIYKVNITFFKSNMVSTK |
| Ga0261704_116931 | Ga0261704_1169311 | F088079 | MLTEKAILPENVPFRSIDEAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHICEIYKVDITFFKSNVVSTK |
| Ga0261704_123484 | Ga0261704_1234841 | F040026 | VPHSTNGSGFWWLQSAYLNVLEERGIVSPETALPLDEIDGMINPFVRFGAFGSGWLVVHKLSRYGVLVACPGNRYYLNQEAADEFRHSFARWWTW |
| Ga0261704_136281 | Ga0261704_1362812 | F088079 | MLTEKAIWLENVPFRNVDGAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKPNVVSTK |
| Ga0261704_139916 | Ga0261704_1399167 | F088079 | MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKADITFFKSNVVSTK |
| Ga0261704_140683 | Ga0261704_14068319 | F088079 | MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLATNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK |
| Ga0261704_153023 | Ga0261704_1530232 | F088079 | MLTEKAIWLENVPFRSIDGAIGRQNCSVYFVESMFVGQSCTFCTSILGYLAPNPYRMLTRLGIFVHICEIYKADITFFKPNVISTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |