Sample 3300023673

3300023673: Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300023673 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290752 \| Ga0247534
Sample Name	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9295372
Sequencing Scaffolds	58
Novel Protein Genes	62
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
Not Available	50
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium SCN 63-9	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → Viruses → Riboviria → Orthornavirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0427	Long. (^o)	13.6161	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000218	Metagenome / Metatranscriptome	1552	Y
F001380	Metagenome / Metatranscriptome	709	Y
F001748	Metagenome / Metatranscriptome	642	Y
F001867	Metagenome / Metatranscriptome	624	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003497	Metagenome / Metatranscriptome	483	Y
F004183	Metagenome / Metatranscriptome	449	Y
F004473	Metagenome / Metatranscriptome	436	Y
F005081	Metagenome / Metatranscriptome	412	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F009017	Metagenome / Metatranscriptome	324	Y
F009043	Metagenome / Metatranscriptome	324	Y
F009335	Metagenome / Metatranscriptome	319	Y
F009606	Metagenome / Metatranscriptome	315	Y
F010305	Metagenome / Metatranscriptome	305	Y
F012024	Metagenome / Metatranscriptome	284	Y
F012750	Metagenome / Metatranscriptome	277	Y
F012875	Metagenome / Metatranscriptome	276	Y
F014264	Metagenome / Metatranscriptome	264	Y
F018933	Metagenome / Metatranscriptome	232	N
F019067	Metagenome / Metatranscriptome	231	Y
F019794	Metagenome / Metatranscriptome	227	N
F021919	Metagenome / Metatranscriptome	216	Y
F024793	Metagenome / Metatranscriptome	204	Y
F024939	Metagenome / Metatranscriptome	203	N
F025284	Metagenome / Metatranscriptome	202	Y
F025423	Metagenome / Metatranscriptome	201	Y
F026569	Metagenome / Metatranscriptome	197	Y
F028056	Metagenome / Metatranscriptome	192	Y
F029355	Metagenome / Metatranscriptome	188	Y
F030627	Metagenome / Metatranscriptome	184	Y
F036325	Metagenome / Metatranscriptome	170	Y
F038563	Metagenome / Metatranscriptome	165	Y
F044295	Metagenome / Metatranscriptome	154	Y
F044687	Metagenome / Metatranscriptome	154	Y
F044924	Metagenome / Metatranscriptome	153	Y
F049768	Metagenome / Metatranscriptome	146	Y
F058155	Metagenome / Metatranscriptome	135	Y
F058585	Metagenome / Metatranscriptome	134	N
F059013	Metagenome / Metatranscriptome	134	Y
F059538	Metagenome / Metatranscriptome	133	N
F060406	Metagenome / Metatranscriptome	133	N
F062325	Metagenome / Metatranscriptome	130	Y
F065302	Metagenome / Metatranscriptome	127	Y
F076700	Metagenome / Metatranscriptome	117	N
F079408	Metagenome / Metatranscriptome	115	N
F084949	Metagenome / Metatranscriptome	111	N
F089618	Metagenome / Metatranscriptome	108	N
F089654	Metagenome / Metatranscriptome	108	Y
F092084	Metagenome / Metatranscriptome	107	N
F093122	Metagenome / Metatranscriptome	106	Y
F098181	Metagenome / Metatranscriptome	104	N
F105213	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247534_100087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1977	Open in IMG/M
Ga0247534_100171	Not Available	1548	Open in IMG/M
Ga0247534_100223	Not Available	1386	Open in IMG/M
Ga0247534_100628	Not Available	982	Open in IMG/M
Ga0247534_100847	Not Available	891	Open in IMG/M
Ga0247534_100959	Not Available	852	Open in IMG/M
Ga0247534_100961	Not Available	851	Open in IMG/M
Ga0247534_100967	Not Available	849	Open in IMG/M
Ga0247534_101034	Not Available	835	Open in IMG/M
Ga0247534_101109	Not Available	820	Open in IMG/M
Ga0247534_101214	Not Available	801	Open in IMG/M
Ga0247534_101216	Not Available	801	Open in IMG/M
Ga0247534_101275	Not Available	791	Open in IMG/M
Ga0247534_101323	Not Available	783	Open in IMG/M
Ga0247534_101354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
Ga0247534_101565	Not Available	742	Open in IMG/M
Ga0247534_101776	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium SCN 63-9	711	Open in IMG/M
Ga0247534_102059	Not Available	674	Open in IMG/M
Ga0247534_102139	Not Available	665	Open in IMG/M
Ga0247534_102168	Not Available	661	Open in IMG/M
Ga0247534_102249	Not Available	651	Open in IMG/M
Ga0247534_102252	Not Available	651	Open in IMG/M
Ga0247534_102293	Not Available	645	Open in IMG/M
Ga0247534_102328	Not Available	642	Open in IMG/M
Ga0247534_102378	Not Available	637	Open in IMG/M
Ga0247534_102382	Not Available	636	Open in IMG/M
Ga0247534_102485	Not Available	625	Open in IMG/M
Ga0247534_102589	Not Available	615	Open in IMG/M
Ga0247534_102736	Not Available	602	Open in IMG/M
Ga0247534_102932	Not Available	589	Open in IMG/M
Ga0247534_103004	Not Available	585	Open in IMG/M
Ga0247534_103024	Not Available	584	Open in IMG/M
Ga0247534_103029	Not Available	584	Open in IMG/M
Ga0247534_103044	Not Available	583	Open in IMG/M
Ga0247534_103087	Not Available	581	Open in IMG/M
Ga0247534_103135	Not Available	578	Open in IMG/M
Ga0247534_103226	Not Available	573	Open in IMG/M
Ga0247534_103268	Not Available	570	Open in IMG/M
Ga0247534_103289	Not Available	570	Open in IMG/M
Ga0247534_103378	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
Ga0247534_103419	Not Available	563	Open in IMG/M
Ga0247534_103570	Not Available	554	Open in IMG/M
Ga0247534_103728	Not Available	546	Open in IMG/M
Ga0247534_103862	Not Available	540	Open in IMG/M
Ga0247534_103888	Not Available	539	Open in IMG/M
Ga0247534_103895	All Organisms → Viruses → Riboviria → Orthornavirae	539	Open in IMG/M
Ga0247534_103949	Not Available	536	Open in IMG/M
Ga0247534_103976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
Ga0247534_104081	Not Available	529	Open in IMG/M
Ga0247534_104148	Not Available	525	Open in IMG/M
Ga0247534_104189	Not Available	524	Open in IMG/M
Ga0247534_104522	Not Available	510	Open in IMG/M
Ga0247534_104534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	510	Open in IMG/M
Ga0247534_104540	Not Available	509	Open in IMG/M
Ga0247534_104674	Not Available	505	Open in IMG/M
Ga0247534_104750	Not Available	503	Open in IMG/M
Ga0247534_104763	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	502	Open in IMG/M
Ga0247534_104786	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247534_100087	Ga0247534_1000871	F029355	LPVYSPATGLAVTASTLSGAPQLIFPKLDRSLVTAFPSPATAPAFAVSIPGSKVLACYFAVSTAGFRARSVFLLHCRNWFAPIPAASLLQTRCPFAGKLIRPLSPSPLPSRSFGSLGIKAFNGRRCRPVRLPKPPDFRSLPAACSIARLGLRIIVRGSLRFRRLAVPFTVPNPNCTSQRRRFFQVWLPLGLPRLADHPVYFGSASFI
Ga0247534_100171	Ga0247534_1001712	F026569	MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLVRSPQPFHLKIRLRINVPDPPHFVPLMDYSMLDTCTLCYTRIAPWLTPNAECCPRIAPCSTP
Ga0247534_100223	Ga0247534_1002231	F089618	VRFGCGSTFPIRYIFGGLLSLVVQPVLRPSATPAANLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVFSPGSTGGKHPARTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNHRLAPVAAAAPTRAGCCPLLPHRPRTSDSHRLLFRRLCRSRLTQLALCAPTSGWAFDAPLASTEPCIAS
Ga0247534_100628	Ga0247534_1006281	F003383	DLAASGAFRMIFSSMDQCIVSFCLSMRLQVAPLPQSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGYPSYPGSRTTRFALVESPGCPGHFPLGYDD
Ga0247534_100847	Ga0247534_1008471	F092084	MVSSCYHSDIKDKMSRPLNVKTVIVPKGQNEYGRDVVRFTADYAASDLFEQCIGCYPLVQNDLKDSWREKESPSPPLMIDPDVMTDEEVERWMAKYVRGNTNAFVQTTCQNIPVKREAGSRC
Ga0247534_100959	Ga0247534_1009591	F098181	AGSCPELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSTSPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0247534_100961	Ga0247534_1009611	F009606	VLMSQAKAKDNESGRGPNVVRTKAKPKVNPITGGNFEYVSESRIGESFVVVMAGPGGVQSFTFHHPIGVTDVDSEDWVCTPTGDIPSLLARRDDPDEADRKVKRDKHRLDLTVKAGLLEKADDDGQLVYPGTDINRQDALAAARSAAKEAVKAEKGKPSPDLYIRFLDNEVQAAESSIRKFLADGKTIQAAETKFPASGYRTRGGPLADRDQEEIEYLSGKTRSQAQDAVVKRIFGQEDTEE
Ga0247534_100967	Ga0247534_1009672	F006591	GGWALATRSFPFAGPWALAPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0247534_101034	Ga0247534_1010341	F006591	TLFPMRRSLGAPPSQVGGRLLDASSRGNAEFSVSWQDRRPDCSKRLLGEAFQHDSQIPCRGTAPYKVMRPLRHGLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247534_101109	Ga0247534_1011092	F058155	LLFFHSPAVSFLTSPMLGSFSRGLPSLRDLPGADALFVPAFAVFLLPVSTFYF
Ga0247534_101109	Ga0247534_1011093	F010305	LKRAEKPHSKFSGRKALDGPATRPRTPLAVENGVGKLTAPEKGAPNVSPGKREWRTPIPHLSLF
Ga0247534_101214	Ga0247534_1012141	F059538	GRVVQPLLRPSATPAVRLQLSLPLLPLAAPVSNLRLASAALPPARPRANLPARIGVVSLGSVSGKCSAFAAYYALPIDWLLTFQLALVSGLQLGLRLLPTHIWRCPSARLALQLPVLTGCCCNN
Ga0247534_101216	Ga0247534_1012161	F060406	STTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0247534_101275	Ga0247534_1012751	F044295	RAEIGRIRKANRTAATPVERFDPEGAKNPGGEWRRGERPDEFAGRSATGLRRGSGRNWGKPVPAVEPNGRTGIEAGKRDSEVAGWDL
Ga0247534_101323	Ga0247534_1013231	F024939	SRVAGPRTLRCAPVADYSSLDTWLSPLPADCSAFRVVHPMLPTDLTRRSTLDARRRLRIAPLPAICVRVAHRIAPCSTLRALHRSRIAPLSMLVRRASCELLRSPRFAPCRLSRISPPGLLRSDCSSFGDLMLRDGLRIAPYADTSHPCVDHGSLRVQHFKLRPVHRLLCARRLAFDSDRGLLRCLHLAPWRCPRIAPCATLGVLRLTRLAPHSTLIAPHQIWITPYPTLDTLLRLRIAPHSSLSAPC
Ga0247534_101354	Ga0247534_1013541	F001748	LDSFRTLSVEPDRVNAMKKKIASRAILAVVLLMTTFAVAAPKAAKPNASQDVPAFPGTLVNARYVYVTSYDGDQFNPNLLSDDRQAIGTVQDAMEKWGKFIVVYQPQQADIVLMVMSRPSEDILAVYDAHGWPGNSQYLWRMMGRSGLQATEAPLVTNLEKAFEQATAGK
Ga0247534_101565	Ga0247534_1015651	F058585	RFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPS
Ga0247534_101776	Ga0247534_1017761	F005081	MADCTILTITCDEPFLKLLRKALHEQVGCGNPMIVASTIDEACSLLPMAHPRLIVVHWNRQGGRSEELNRLLWATTVLARGVPVLVIADRYRVDQATTFYRMGVADYISRTHHEGQLGRVLDTYLRHRPAARPPEAASPDDPIQSVKAWSAPTQPLKAYVV
Ga0247534_102059	Ga0247534_1020591	F089654	SRVRGTIQRPVCMRTFALRPDGSDDRQSLAIATFQPATGHSDQRALNELNILPEPETRYGLSLAHNDAYATIARSMFLACTFVSLSKTCANPFDTGLFRSVRFRGRSGAMSLPDTRFPRRSPTLPIYPRSPLPFRSSMKTLRIEVFNRFPMREARLARHPIAVSSPPLPLSIRLRINASNSLRPARPPSACLLPVRSVIPPQPEGIGKRT
Ga0247534_102139	Ga0247534_1021391	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKLDNFNFTLNR
Ga0247534_102168	Ga0247534_1021681	F025284	RKGNQRPSRRSGRKSGPRGRDQIIAHPPQLPSYGITRDVRLRFQALAATGQAITFQNLLDTILVATGGTTAADLFEGVRVNSVEMWAIAALGTPATLVLVYDGTTVGAMGDQKTHTDTSMGIEPAHVKAGPDRLTQAGQFQPSSANTAFRIDVPAGTVIDVSLTLRQPVLGQVVSSQNGLVGATAGTVYYRGLDGKTTALTNFPVLGADSVI
Ga0247534_102249	Ga0247534_1022491	F021919	VTRYRSETPRRHATAQSLAARIAGCFPFRSPQPFLEGYRSMLPGSPASFPSWNWHLEAAFHSPETTARFRATISRSKLPTCYFDTLPFVRPARSDFDSLTRSGSPRYAPDRYRNPVARLALSTSSPSSNLHSPLGPFGPFRIKAFDPIPGRKVRFPSAPDCLLLPSFNSILLASMPDHRSRLAKRSVACCSSD
Ga0247534_102252	Ga0247534_1022521	F084949	MSGRMQENSDIAVRLVPEETRAGGATTPVLWRAEAPLQMERMVSALVTASKEANNLFREVSYCSHNPRFDTERDMPDVETNNW
Ga0247534_102263	Ga0247534_1022631	F019794	LRWRLHPLAAPASNLRLASAALHPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPLVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTTGFHRLLLQPSACASCRYDSPACAGCRPFAIPAANFRLASAVTPSSFTGFDSPDLRRMLLPPAGPLVHPLFQLDLASPAEPSMSIQSPPVLAPSGSASF
Ga0247534_102293	Ga0247534_1022932	F028056	PGFTARLSEPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRACIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLRPVIHAPLMRSHDATPSPLPFGLSLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTPLRPVWLSRQIRF
Ga0247534_102328	Ga0247534_1023281	F009043	ALSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARRQMPWQKAVMIFVRGC
Ga0247534_102378	Ga0247534_1023781	F018933	STLDSLYRPRIAPRSVLIDRCCPPIARRSTLNALLRSQIAPRSILCARADHGLLRAQHLESSPRVRIAPYSTLCVPRRSQIAPRSTFPAPYRLQIAPLSVIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLAPCLVLLADCSVLNT
Ga0247534_102382	Ga0247534_1023821	F009606	TDVDGEDWVCTPTGDIPSLLARKDDPDELDRKAKRDKHRLDLAVASNLLEVDDDSGLIYPGTGIVRQAALAEARAKAKTAVKADKGAKVTPDLYIRFLPSEVQEKETALREFLAKEQTIRAAETKFPTSGFRTRAGPLADRDQESVGYLEGYSRAQAVDATVKRIYGIDDDDD
Ga0247534_102485	Ga0247534_1024851	F059538	LVNSVVQPLLRPSATPAARLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVSGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN
Ga0247534_102589	Ga0247534_1025891	F004473	LIRRVEKPEGEWRPDDITGAPEIGADNGSKVKNSPGFGFETEPSGGALGRTGSQRNTGVEAKAQVGSVDLVMVAKASLRASERPFRVSGSGRMRALKTRLPH
Ga0247534_102736	Ga0247534_1027361	F009335	MVKTRIRNYKRVFTWFASRRPQTPAEASLEASLKIQRLQGAGRPCYEAGNSACRGEWRREAGSQCAPNASMGKRV
Ga0247534_102932	Ga0247534_1029321	F009017	VVPSDPIPSLAHRGHASALSSAFRNAERLACLLPDYRFAGHRFNAFRRAAACLPKLNRSPVTAFPSPATAFAFANSIPRSMVPACYFAVSSTGWNTRSAIQLRRRNWLAPIPATSSLQARCILASQLMRLLSPSPLPSRSFCSFGINAFNGRRRRPVHLPNPPDFHSLPAILSIARKGCGSSSVVRYVSGGLLFLK
Ga0247534_103004	Ga0247534_1030041	F009017	VPSDPISSLAHHGHATVLSIAFRIAVRFACLLPGNRFSGYRFNAFRRAAAFYPKLDRSLVTAFSSPATASAFTDSIPRSMVLACYFAVSPAGFRARSVFPLHRRNWFAPIPAASTLQTRCTSTRKLIRPLSPSPLPFGSFTSLWIKAFNGRCCRPVRLPNPPDFRSLPATVLFLEEGHGSSFAIRYVFGGLLFL
Ga0247534_103024	Ga0247534_1030241	F012750	MEAAEKRQPLRARERLLRATGSVGEPHCEVPGNIDPRGEKSTSGERNGETSSATQRNAQYRACRWRARLEIGSLGT
Ga0247534_103029	Ga0247534_1030291	F012024	MHGTEHRVSERRALRLLAPRKPVYPASASKLPDTPQPLCLSKTGPFARDCLSLARMISACADSIPESKILACHFAHSLASLSARSAFWLRRQPLVCPSFRLHPRLKPVAFFTGLLCRLCRLLPLPFRSFRSLGIKASTGFATVRSTFRNRPIFVRSPQPFH
Ga0247534_103038	Ga0247534_1030381	F000218	LVDSITSLGGLLVPIIAILVGGAIAITTMILRHQERIAKIERGIDPDASPRG
Ga0247534_103044	Ga0247534_1030441	F062325	VPSDPISSLAHHGHATVLSIALRTAVRTACLLPGNRFSSYRFNAFRRAAADPKLDRSLVTAFPSPATTPAFADSIPGSMVLACYFAVSFTG
Ga0247534_103087	Ga0247534_1030872	F079408	MPVRPIGSTAGLGLPQFPQLPRFRPVASLTGELVRLLSPSPLPSGNFSSLGIKAFNGRRRRSVRLPIPPDFRSLPIAVLFLEEGHGSSFTVRYVFGDLLFL
Ga0247534_103135	Ga0247534_1031351	F004183	MTEGGPNGCEACSRVDPEGAKSPEGERRQAAQPAEQAGKECDGLEAWMQPDAGANQQLAAEPKSRTGRKNGKQVSEVAGQDL
Ga0247534_103226	Ga0247534_1032261	F001380	PGFTVRFSDPSACRRSLCNRMFRIKSLSLSVAAFQPATGHSNKHVIIGLSIPPEPESRYGLSLAHNDAFATIARSTFLACTFVSISKTLANSFDSQLLRSGRFRGRTGATSTPGTRFPLLPSTLRIHRRSPLPFGSSLKNPSDQSVRSLPNSEARLTRRPMVSYSPPFPLTIPPRISA
Ga0247534_103268	Ga0247534_1032681	F044924	MRAPEIGADNGSRVMNSPGIGFETEPSGGTFGRTGSQRDIGVETKGQVRSVDLVMVAKASLRASERPFRVSGSGRMQVLEPRFLY
Ga0247534_103289	Ga0247534_1032891	F025423	PISSLAHHGHASVLSTAFRNAVRLACLLHGNRFSGHRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRQTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSESARFPLAPRSLFYC
Ga0247534_103378	Ga0247534_1033782	F001867	FVFPRCNVVKNSPDQIWFQKYFEFHCDDCGSETAFRSRRRTFSERYLLPVFLLQPVRCSECFRRVYRLVFMPVMDRLPQAIAKQPSSVARSGGTRNVA
Ga0247534_103419	Ga0247534_1034191	F065302	GSRYDSATRLHADVRFATRCSGKTVHRSPPPLFSMPRVIATNKSSSDFSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFAKPFDSRLFRSVRFRGRTGATSMPGTRFPLHSSILRIHPRSPLPFRPSFESPPDRSVRPVPNPEARLTRRPIVSYSPLLPLAIPLRINTRNSLRLSLTY
Ga0247534_103570	Ga0247534_1035701	F014264	TMIRRAHVIRDYFWRGGERRKIGRLVRVSFSVWKRAEHYNPKGSRGPDGE
Ga0247534_103728	Ga0247534_1037281	F012875	PGFTARLSEPPACSALDPQPDTPDSTFVARRRRFSACAGSVQQTYPQRTCIRPEPETRNGLSLARNDAFATITRSMFLACPFESTYKHCGDPFDRWLSARFGFEAATGRIHHPRPVIHALLTRSHDATPFPLPFGLLRPPDQSVQRASSQQARLTRHPICFLLPAALSFDCALDQCSKLR
Ga0247534_103862	Ga0247534_1038621	F093122	MRSHVKAALILSCLPLFFAATAQGGEGVAVKITNDGTEVIVVTVYDMSASPGRMVLANARINGFSSVPISVAADASGRAHLRWTATGTDPTFPRCGHAHTTVGNADSVNVHADSTCRV
Ga0247534_103888	Ga0247534_1038881	F076700	QLSGSDRFRVLRLDRLQTSDSHRLFRTSDRPVATNSTCVVPSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLEWLRLQFAPAASPFAFTGREPLGLRLVAPSPAEPVMHSLFPPNLASTAKLSMSIPFPLALASSGIFQLNIFRLASAFALLVRPAIPLRLAPQVSPSVRAGGH
Ga0247534_103895	Ga0247534_1038951	F105213	FRLLSREEVQFEGYVERHDVFEDLYVSSTDYKEATDKLEHHIAASLGRAWMSKCGIPALLQGIVMETCYKPRKVYFKATGLLVDLGYPAPDMGENIHWVILRRGVLMGDPLTKPVLHLVNVCNRHLQKRILDPNFYSRLENSSEISESLREFSKLLNGP
Ga0247534_103949	Ga0247534_1039491	F003497	LNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPELIRHFYLLEAFVSERPFARPQRLLSFENHRGEVKAPDLSLRRNSELFFQPVRPFAPTLDGVHHASGDVRCTRPVAVSRAQNSQTSIQLSLPFRTFVPPDRSAQSAAWSEKLTLAPGPFFLRSPKASITF
Ga0247534_103976	Ga0247534_1039761	F001748	MKSDAMNMKNKISSGVVLAAMMLMTALAFAAPKPKASNPQDVPAFPGTLVNARYVYVTSYDGDEFNPNLWPDDRKAINTVQAEMQKWGKFIVVYKPRQADIVLMVTSRPSEDILAVYDAREWPESGQYLWRMMGRSGLQTSEAPLVTNLEKAFEQAASK
Ga0247534_104081	Ga0247534_1040811	F036325	MLATDATELHDGAQRRGAEDVMPDQNDDRSGTGSDEVLKALEELESVLRENAESERLLSKRIAEVRLARENGREWKAILGDEDDPGTVQLVSTILRRQSEASGYLRRSLVVALRAEGQSIPSIAHLFGVTHQQ
Ga0247534_104148	Ga0247534_1041481	F059013	PRVHGTIERTTGMLGVRSAAESIRFRIRRSPTPLFSLRRVSATDPSSRTLFPPELETRNGLSLARNDAFATIAGSKLPTCFLASPPEDSTDPFDFGRLAQNP
Ga0247534_104189	Ga0247534_1041891	F007311	RIAPWSRVAGPKTLHFAPVMDYSMLDAWLSLLHADCSALHIVRPVPVTDFTRCSTLSALFLPRIAPRSILCARAGRGSLRATDCSVVQHLELCTACGILRTRYLAFRVAFGLLHTRRFPLCTAHGLLRARCLALHAGLRIAPYADILRPYAGHGLLHVRH
Ga0247534_104522	Ga0247534_1045221	F049768	MRLASTGLLLTAIPLLLMSTAAVGGLNGVDVTITNDGTEDVVVTVYDTSTQPSSVVLSRERINGFTRVPVSLAPDDNGRGNIAWTAVSADPNSRRCGHASTEGLTDSSSVQVHTDAACGS
Ga0247534_104534	Ga0247534_1045341	F044687	LRLGSGLTANRINLPYASELYLAFNVSSSFSSTSALL
Ga0247534_104540	Ga0247534_1045402	F038563	PGPNYSGYTNFTVPTMARNRRTRRNRGAGQGTLPGPSKFVTPVQGKDGSTLWAKVQKPTGVPPHITPTFFSVTLKGSPGQMLLHGAKCSNAWTTGKVPADAFTDILVQVSSDDILAMTSTIWYSSQ
Ga0247534_104674	Ga0247534_1046741	F009017	SDPISSLAHHGHATVLSIAFQIAVRLACPLHGHRFGGYRFNAFTRAAALYPKLDRSLVTAFPSPATAPAFADSIPRSMVLACYFAVSLTGFHARSAFRLRSRNWFAPIPAASTPQTRRNLTGKLIRPLSPSPLPSRSFGSFGIKAFNGRRCRPVRLPNPPDFRSLPAA
Ga0247534_104705	Ga0247534_1047051	F019794	AALRPARPGANPPARIGVLSFGSTGGKHSTFAVCYALPFVQWLTFQLALASFPRLGRRPTADSHLVLILQLGTCPTSGFHSLLLQPSACASCRYDFPACTGCRPFAIPAANFRLASAVTASGFTSFDLLGSRLAFLPLAGPLVHPLLQLDLASPAEPSMSIQSPPVL
Ga0247534_104750	Ga0247534_1047501	F004473	MKPVERFDPEGWKQPEGEWRSDDITRALEIGAGNGSKVKNSPGFCFETELSGGAFGRTGSQTITGVETKEQGGSVDLVMVAKASLRASERPFRVSGSGRMQIR
Ga0247534_104763	Ga0247534_1047631	F019067	TDCSAWNPLDFLPEWEEVSILDPSELYQIGQRTASVAHEQQVPLLGLATKVVGREVGDDRVDLSNAPDALCTTLVVQEDVIHMITSDEDTSIRRRSWNFCEVTSGPITDPTQGFDHVRKEGDFSNLGFNDSVILRIILDVQKGEGEEHSSTQPGKMSMLGSRLATPR
Ga0247534_104786	Ga0247534_1047861	F030627	GRYAVSDRFCGDLLPARARLGPLSVRHFLRIASGRRFCCGSFRRSNHPTGWHGGFPTGRPWDFAAERRKIAPTDEDRRSLPALPFPGPAPRIGLASSAVTGSIDLPWVQCTGVEGLSPRDPGTSLAATLTPIAHPAFWRRLVRGGLVAGRRLPPCPRLIASHGLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023673: Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences