NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023671

3300023671: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 67R (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023671 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132854 | Gp0267194 | Ga0232117
Sample NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 67R (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5473721
Sequencing Scaffolds13
Novel Protein Genes19
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2
All Organisms → cellular organisms → Eukaryota → Sar4
Rhodophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater Microbial Communities From Monterey Bay, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000020Metagenome / Metatranscriptome6197Y
F000241Metagenome / Metatranscriptome1481Y
F000267Metagenome / Metatranscriptome1412Y
F000326Metagenome / Metatranscriptome1295Y
F001300Metagenome / Metatranscriptome727Y
F002741Metatranscriptome533Y
F009535Metagenome / Metatranscriptome316Y
F016230Metatranscriptome248N
F026575Metatranscriptome197Y
F047402Metatranscriptome149N
F048020Metatranscriptome148N
F049390Metatranscriptome146N
F060477Metatranscriptome132N
F067773Metatranscriptome125Y
F068871Metatranscriptome124Y
F080695Metatranscriptome114N
F105294Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0232117_100697Not Available966Open in IMG/M
Ga0232117_100706Not Available960Open in IMG/M
Ga0232117_100975Not Available836Open in IMG/M
Ga0232117_101004All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae825Open in IMG/M
Ga0232117_101204All Organisms → cellular organisms → Eukaryota → Sar766Open in IMG/M
Ga0232117_101294Rhodophyta743Open in IMG/M
Ga0232117_101413Not Available716Open in IMG/M
Ga0232117_101514Not Available691Open in IMG/M
Ga0232117_101845Not Available633Open in IMG/M
Ga0232117_102134All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae594Open in IMG/M
Ga0232117_102160All Organisms → cellular organisms → Eukaryota → Sar592Open in IMG/M
Ga0232117_102184All Organisms → cellular organisms → Eukaryota → Sar588Open in IMG/M
Ga0232117_103120All Organisms → cellular organisms → Eukaryota → Sar505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0232117_100172Ga0232117_1001721F105294SRKSALVDPRARYEELRMAMDEVMGCGGSNESARFPEIEQTIQSMWQSMPKNARGRVEWKQLRYMAHRYFMQQSSIMFKGFEPNKEVNVSHVGGAQIMDQNAPSFADMLVSGKWANEGYSQHDAVAMIATMEQMMFDSESAFLEKAMNQLKLDPTKSISKGDMPRLMEAYTVQWMFSSDPESLAVVVRDPRVLPQALPLWPEIKNFAEGQFKTMEHQRASEHTSSARSLLQKEYTFDDAHEAIGSIGRTFASYWETECQNIKSSLVQMDKTNTGRVKLSDFYGSNMDGEWRFGESEAYLRDLGALDDSSWRGPQVIIPNYMQAASNCIVSTPNYLVCCVNECEDIMGEIEKTFQAPVAPVEQVLQLVGGLSNFDDESPDLNGTLSAQLHRIAEVHGGKVPLHGRLFAQWLHYVFPRECPFPHKIGATVSQTPVERGEDVLASKDEVELHAQKRSDGSDSALAEEQEVMSQWTEDEELIGDYSSQLHAPWEKSRWAASGGILVIILVAFAALIKSTGSVAAVSLSGHDSKLDSKTHFV
Ga0232117_100697Ga0232117_1006971F080695ENRHWPPIKPDSCCMRSMSATAASVSAAQQTQKEMGNSAHADSMNVRSHLLTAGASLMALLFVSTVPVTLHSMQFRGAVRKLSAKPEDVSNHSAFGFLFESNGTEDRQQGIYRPELPRYPVSTMQVCNYGSERIAAGFSQLAGTPSYWSIAGPLVSPKQCYKFDPVLFGKHAVEGATLECHYYREGSSWVVAFGETVVYKRNSVYSGEYACAGSPVTCAYNGGFVYRR
Ga0232117_100706Ga0232117_1007061F060477DYSGSSVVMACESPKLEGEPDTRPIVRQLLTRATGCLVAGLLLVAYLSPSLQLFQLNLTRSDSRKLRSFNVSEQPVQLYNASNKQLVGPGSGTGVGAPGGPNSPLCVNPEEVTHFMVCNYGATRILPHISSWAPSGRPGRYVYWGTGGDWIAAQQCYTFDTQIPSSHDNLPIDCVYRRESENLPWPWHPCAGGTFRYKRESQCVGKYICSGNPVVCTKAAFSFIIPGAPQWNGVGR
Ga0232117_100975Ga0232117_1009751F080695QQTQKEMGNSAHADSMNVRSHLLKAGASLMALLFVSTVAPVTLHSMQFRGTVRKLSAKPEDVSNHSAFGFLFELNGTEDRQQGIYRPELPRYPVSTMQVCNYGRERVTPRFGQLDGRPGAWSITGTWVPINKCYMFDPVLFGKSAVEDVNIDCLYLPEGAGWTPDAWGRCGGGELVYQRNSVYAGQYSCTGSPVQCVYNGGFIYRRR
Ga0232117_101004Ga0232117_1010041F001300GLKRTWDSKLKMGIRSGQLNLAITGLSLLMFMTIHLFQFRFGDTDQFGPYYIRPPPYLINIWGILSLNLFWTDDTSVARVGVRDIYALEFQIFKNPIWCSFYLFCVVTFMTHACIGWKKAISALGIPKGHWDRVAIIGYIIFGTIGSIYISFPVYCMLSSPKAGWETSLQAPQGRVGM
Ga0232117_101204Ga0232117_1012041F009535SLQLLGCPTIAHMAGRRSNRITTAIAAAGLVTLACNCFSLVFVGPATPALRAQKVARSVGVDYLLRNGPKDADPPLVEPAAATGPMHEVTFKKRPFGIARYAPGASGNGAVVREVTPKSRYPGDPQGQAFVAGVQPNWVVKTINGQDVTGVPFEAIMESLDDEVLDPVAALSLNLKEAGVSTTDFSKAGSKSYGGVGESTFKFGGGNKAELPITITYQG
Ga0232117_101231Ga0232117_1012311F000241MPSSRRPILSCALAAGAAICTFSSLNFVGVPATQDVRGSRLVARVSAEYLERLGPKDADVPFDAAAAASGASHPVVFKKRPFGILRYQPGAGGKGAMAMEIIPTSRYPGDPQGQAFSSGVQPGWVVKSIAGVNVLGEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPASTPIDVEFAEVPGYVWKGAALTQDGQDGFAR
Ga0232117_101294Ga0232117_1012941F049390WHVCRALHFFLKLAERLFARTSSNSKYAGKTVLVTTGRQAKTLHGVRALKEVGCRVVVTDYQEISASAVSTACDATAVLAPLDPSKVSQWVDHLEKIIREEKVDLVLPMSTINEALFMGAAKDWLSKSLPHVSFACEGLEMMARLDNKALFAEMCKESGVPIPEDGVITNRSQLDDGSVPFKDMDVIIKRIESTVNRDEEIKIVPHGGKAPETVQPTVSDPWQWQRFIRGTEYSAWFVCVDGQITFQ
Ga0232117_101413Ga0232117_1014131F047402QPRLNDMVYFTCPRAFLIFYLAFVAGADVCSDETCGHPGAVMDDGVESMMQVELLQTESKHASAKNDDPETDSNLMEEEAVPTRSPKIAATIQKIVNIAQKAVVDIKIKQAQIHKDAQIAAAKSAKLEKDLNASQQISTQLSDPKIAAKIVHIFQNPTDAKVIDAKLADPKIKKQFIADLKAGKNVTDVLNDLKGCGPSA
Ga0232117_101514Ga0232117_1015141F060477PGADYSGFSVVMACESPKLEGEPGTRLIVRQLLTRATGCLVAGLLLVAYLSPSLPLFQLNLTRSDSRKLRSFNISEQPVELYNASNKQLVGPGSGTWVGAPGGPNSPLCVNPEEVTHIMVCNYGATRILPHATQPSGQPGGWVYWASRGDWIAIHQCYNFDTHIPWSHDNLPIECSYRRESENYIWHTCAGGTFRYKRESQCVGKYICSGNPVVCTKAAFSFIIPGAPQW
Ga0232117_101845Ga0232117_1018451F048020RNMQLLILGCVLGSLSPAFLVPRMQWNDSTRVSDFRAFNQDVAARFGQQPQQEASAWMPVLTGVAALGLLLGVIGHAQPAYAEDKEVKKTYTKEERVAKFQKLLEQQTLATNPDGTFKNG
Ga0232117_101882Ga0232117_1018821F000326DEKLAHAKEDVEDTKASLSADEQFLMMLKEKCQMTDKEWEERQKTRQLEMEAVSKALAVLSSDDAHDLFTRTFNPSFVQRSGLTQSSRRTQASKLLSAVAHKLNSPRLATLAVQVRLDAFTRVKKAIDDMIAQLLKEKADEIKHKDFCVDEFNTNQLQTEKKEREKQDLIAKIEDLELTIKELTEAIATLKAEIAEMQVQLKRAGEDRE
Ga0232117_102134Ga0232117_1021341F068871VRFNNFQTKVSGLEKWTGTKTTVHFSDSMLYPTFPEYKVEGADVVLSLFMDRLMVAGSYFVFRICADLAFRETWKFMSDPALGWISHEDILNMKRELGVSKWKHPTSGVLAIDWFVRHRPDPSTPVYIAGFDFFQGPTIHYYDKTEPMYERINDLIGVNVMHQPEKEKAFVEKLVKEGKVQWLSACKDTASTK
Ga0232117_102160Ga0232117_1021601F000267MACWCETNDKEKTQSIKDAETRIDDLTTKIEELTASSARLNTEIKNLKSEVAENQDALDKATAIREKQISEFNAEEKDLVSSISSLKAAVGTLSKHHGGSLLQMPRNHLHKVASLLQHTLQTHKHFLEGALTHAQRRVVTSLLQAPDDYLDAAPTFKQSYAPQSGQIFGILKQMQETFEGNLATSQKEEMSNQQAYE
Ga0232117_102184Ga0232117_1021841F067773LSTQRGIKMGTDEWEALANPNFKGTIDKGHKEGQQTFGETYKGQQDQAGGVLALLEVIQSDFATLKADTEAAESEAQKAYEDLMTQAKKSKAVKEKKVEMNTADKASAEATLQEDIAELKSTQDELLAADRYYEKLVPQCVDQGMTWDERQKARQDEITSLKEALKILGSEDMATSA
Ga0232117_102337Ga0232117_1023371F000020KLTEDIADLSKAVSELDSAVAEATKLRREEKANNKEAIEDAKQAQTAVAQALTVLQEFYAKSGQATALLQQQPEAPEIFGSPYKGMQSENGGVVGMLEVLQSDFARLEADTSAAETVAQKEYDSFMTDSKVDKLSKSKEIDHKTTKKQDETEALTVKSADLEGTQKELDAALAYFDKLKPSCVEAGVSYE
Ga0232117_102412Ga0232117_1024121F016230MTIPIYVDDTGVCDSLAVKNCHTLPQGLPEMGCSYAIVWQKRDGMVIPVITRGLHKFMDASTKFTFRPNQGYVGRISEALHSIDHEVIPNMFFVDPRAFLRKHSAILNGISSVLFVPHPAGVLLELGFPKPNDAEDSLPFLRTSHALAMEQCVLAEIPSGLSL
Ga0232117_102981Ga0232117_1029811F002741GKKSFMQQEQEPAGPPPPPGFKAYKKSEGSGSVMDMIQQIINDTKEMEAEAIRSEEDAQNAYEAFVKETNAGIQAKSEDIVSKSDLKAATEADLVEAKEDLGAVNIEIAQLEKYRTELHGSCDFVMKNFEMRQAARDEEVEALKQAKAILSGAKFSLFLQNA
Ga0232117_103120Ga0232117_1031201F026575FASLVSTMQRLLSLVALCYTADARLGEQVANTDSVSNHPAGPCERQAVFDIIMCNSHMCNDCVMDYCTEKCQWVQREFAGCVCQNWPAARGSFSGGNFAGKGRFGDESDYAHAGFRARNTYGDDATGQGFRDGSDALDGHSAYDWTPEGIAAAAENR
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