Sample 3300023563

Basic Information
IMG/M Taxon OID	3300023563 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290748 \| Ga0247530
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA4 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA4 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	28551954
Sequencing Scaffolds	29
Novel Protein Genes	32
Associated Families	28

Dataset Contents

Total Genome Size

28551954

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	1
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
All Organisms → Viruses → Predicted Viral	1
Not Available	19
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0427	Long. (^o)	13.6161	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0427

Long. (^o)

13.6161

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000218	Metagenome / Metatranscriptome	1552	Y
F001117	Metagenome / Metatranscriptome	773	Y
F003497	Metagenome / Metatranscriptome	483	Y
F003641	Metagenome / Metatranscriptome	475	Y
F004178	Metagenome / Metatranscriptome	449	Y
F004473	Metagenome / Metatranscriptome	436	Y
F006375	Metagenome / Metatranscriptome	374	Y
F010404	Metagenome / Metatranscriptome	304	Y
F012024	Metagenome / Metatranscriptome	284	Y
F014264	Metagenome / Metatranscriptome	264	Y
F016097	Metagenome / Metatranscriptome	249	Y
F018933	Metagenome / Metatranscriptome	232	N
F021626	Metagenome / Metatranscriptome	218	Y
F030619	Metagenome / Metatranscriptome	184	Y
F039163	Metagenome / Metatranscriptome	164	Y
F047359	Metagenome / Metatranscriptome	150	Y
F061340	Metagenome / Metatranscriptome	132	Y
F065397	Metagenome / Metatranscriptome	127	Y
F068321	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F069734	Metagenome / Metatranscriptome	123	N
F072941	Metagenome / Metatranscriptome	120	N
F081918	Metagenome / Metatranscriptome	114	Y
F089697	Metagenome / Metatranscriptome	108	N
F097372	Metagenome / Metatranscriptome	104	N
F099573	Metagenome / Metatranscriptome	103	Y
F100551	Metagenome / Metatranscriptome	102	Y
F104140	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247530_101098	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus	2136	Open in IMG/M
Ga0247530_103472	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1409	Open in IMG/M
Ga0247530_105028	All Organisms → Viruses → Predicted Viral	1165	Open in IMG/M
Ga0247530_106985	Not Available	956	Open in IMG/M
Ga0247530_107938	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	883	Open in IMG/M
Ga0247530_108369	Not Available	851	Open in IMG/M
Ga0247530_108651	Not Available	834	Open in IMG/M
Ga0247530_109023	Not Available	812	Open in IMG/M
Ga0247530_109151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	805	Open in IMG/M
Ga0247530_109444	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
Ga0247530_111019	Not Available	705	Open in IMG/M
Ga0247530_113459	Not Available	613	Open in IMG/M
Ga0247530_113672	Not Available	607	Open in IMG/M
Ga0247530_113709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
Ga0247530_114307	Not Available	589	Open in IMG/M
Ga0247530_114506	Not Available	584	Open in IMG/M
Ga0247530_114540	Not Available	583	Open in IMG/M
Ga0247530_114548	Not Available	583	Open in IMG/M
Ga0247530_114715	Not Available	579	Open in IMG/M
Ga0247530_114783	Not Available	576	Open in IMG/M
Ga0247530_114922	Not Available	573	Open in IMG/M
Ga0247530_115770	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	552	Open in IMG/M
Ga0247530_116235	Not Available	541	Open in IMG/M
Ga0247530_116312	Not Available	540	Open in IMG/M
Ga0247530_117593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
Ga0247530_117903	Not Available	510	Open in IMG/M
Ga0247530_117999	Not Available	508	Open in IMG/M
Ga0247530_118193	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
Ga0247530_118497	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247530_101098	Ga0247530_1010981	F030619	LERNTYKRLTLLVKSLPTEQSGTPSRKGARAHRHRGGDMSPLQQVWTACWSGLVLSGWDSLCHNVRGSALHSKRWKNVPCNIRKNVVDTLCHLAVRQPENGFAFSRLSRSLPEPPQRECVRHLQAAKLMASTEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPAARGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRLADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSSELDLYASRVASVGATLNREKTFRADHAWTACEILALPRSHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRVTEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247530_103472	Ga0247530_1034722	F097372	MSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADILENLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247530_105028	Ga0247530_1050281	F039163	IYMSVIVTERFIGHIGSEKTPIRIVQQCGILVNSLTTEPAIWKTQY
Ga0247530_106985	Ga0247530_1069851	F069734	MSPWLNRTLHLRLAPRMNLRAHSGHDKLGMASCALLISIRRFTIGKPTMNSPTETITYALYHADVAVPTSY
Ga0247530_107938	Ga0247530_1079381	F081918	CPYLLIILFIIFYGVAERRVNLRLILFKNKYMIIRVRMLT
Ga0247530_108369	Ga0247530_1083691	F068861	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFML
Ga0247530_108369	Ga0247530_1083692	F097372	TVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDAATIA
Ga0247530_108651	Ga0247530_1086511	F089697	LITRSTVGAASSGYPSGRPPAFAGAATSGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247530_109023	Ga0247530_1090232	F018933	SQVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247530_109151	Ga0247530_1091511	F004178	MRSITSLAAESGVGEHTARESECAQRVRRERVRGER
Ga0247530_109444	Ga0247530_1094442	F001117	MTENLLLIPSPFYRCAGPNCGVLKGGSDRWWIMWSSFGDYEAPVMHLAPWDEKLAIQEGALHVCGEGCAQKLQSQFMGNVSENRGRRSSG
Ga0247530_110910	Ga0247530_1109101	F104140	MKSENKLDGASNFRAWKTRIDLILANNKVLDIVKGKIMEPQFEAGKE
Ga0247530_111019	Ga0247530_1110191	F068861	VQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247530_113459	Ga0247530_1134591	F006375	TIGATTAAVTQLVQNTGAFQSIPRGISSIGQGHDAGLFSREWTVVTYYNTDDWTQGGPFATAGSRFIHGSVVPSTTGIVTGITQRYSDAKFIKLELKFVPMRGAAGHVFDIAVGVSQGRETAPADRTAIELLEGNTYVDMVPLMSVSGFPAPATWEINMDLPFITNVFKPANFYQQPPRLNYNARLHFPAALTTSQPLLAVRV
Ga0247530_113672	Ga0247530_1136721	F004473	VMKPVERFDPEGWKQPEGEWRSDDIATASEIGADNGSRVKNSPGFGFETKLSGGAFDRTGSQRIAGVETKGQGGSVDLVMVAKASLRASERPFRVSGSGRMHVY
Ga0247530_113709	Ga0247530_1137092	F099573	MYIAQRLARDRHEERLKRAQDERIAHQVVELQKMEKRRERAERELLYTWQRVEQLRALL
Ga0247530_114307	Ga0247530_1143071	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYTFKAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS
Ga0247530_114506	Ga0247530_1145061	F016097	MNTRVVIAFFGLAVACAYGERVSCREVKKSDGSLGFDCAAVVPTSDLTAQNLYILWLQANRQGQSHALNIDVPNYQIQDVIQAAAKGGSSESRTAINVNLARPDFSYIAQKQEGAGEVSQSFDVNLQYERLNGKSVHFADDGAGSERYSPLRGNIADPSG
Ga0247530_114540	Ga0247530_1145401	F003497	PSDPLNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPELIRHFYLLEAFVSERPFARPQRLFSFENHRSEVKAPDLSLRRNSELFFQPVRPSAPTLDGVHHASGDVRCTRPVAVSRAQNSQTSIQPSLPVRTFIPPDRSAQSAAGSEKLTLVRGPFFLRSPKASITF
Ga0247530_114548	Ga0247530_1145481	F061340	LQSYIYILMNNLTRNQITFLREVPSDIKVDKSSGXRHHYLDGSINELSLFIKLIGDDKIYLLIPLFAGSESLKNATLNLSEPFLVDNKSNSKLIIKFILEQXYSSGFDIRE
Ga0247530_114715	Ga0247530_1147151	F072941	KSEAIESPIMINITLEEIQFISIRLLARVHFGCDEWMAFKGD
Ga0247530_114783	Ga0247530_1147831	F100551	AQVSSLCCPCLRAFQFVPLDLSTANRRLTLRYELNFSHAVQQVTGLFHLPLASRPQPKPLAVCLVPMDRPVSCRAFHFASSVCRTFTLRR
Ga0247530_114922	Ga0247530_1149221	F004473	VVKPIERFDPEGWKQPEGEWRSDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGAFGRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPSRVSGSGRMQVLKPRFPH
Ga0247530_115770	Ga0247530_1157701	F065397	VQVRVFVSRLFSPDNLTLVMAITKTTVTTDMRWMEIAPPRRVCGGRRRPFEKTLRPIAEERSVSNGELMEGLRPSFPAVSGFKAEDDNERFSSAQC
Ga0247530_116195	Ga0247530_1161951	F000218	MRVVESITSLGGLLVPICAVLVGGAIAIIGMVHRHQERLAKIERGID
Ga0247530_116235	Ga0247530_1162351	F012024	MHGTEHRVSERRALRLLAPRQPVYPASASTLPDAPQPLFLSKTGPFARDGLSLTRMTSACADSIPGSKVLACHFAHSLAGVPARSAFWLRRQPLVCPSFRLHPRLKPVAFFTGLLYRLCRLLPLPLGSFRSLRINASTGFATVRSAFRNRPIFVRSPQPFHLKIWLRII
Ga0247530_116312	Ga0247530_1163121	F068321	RMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLHIRSLFLFRRSLSC
Ga0247530_117593	Ga0247530_1175931	F003641	MKRHTHHSETKAVHGAADLDKKNGPLATPIYQTSTF
Ga0247530_117903	Ga0247530_1179032	F014264	ASLAGSSGSGTMIRRANVIRDYFGRGGERGKIGRLVRVSFSIWKRAEHYNPEGSRGPDGE
Ga0247530_117999	Ga0247530_1179991	F097372	MSSESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLTAASPSNRSQINLDIGKLLSERAKLDKLIKQFDTAAIVXHAFPHFNSIDRXVWVGSRLQIR
Ga0247530_118193	Ga0247530_1181931	F021626	LFTRLEARVFRPAVAMFTSNDAVLPFPLRASLDRVDAQLDELIYQAFPSSKAS
Ga0247530_118497	Ga0247530_1184971	F047359	RFHCSAAYTPCLRCTFPPRRPATGSVLSPLILSQHVVLCDSGESGGCIHPVPSPPTLAFVPLVQTRHSHTSRKSVSRGGHLSKLHYGSLALQPADLFTLLTDRTTLAHSPRGFLLPAFRRVGHPPRRRLLLRWQLGNFHRRDLHPQEWQLASLHTKVVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023563: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA4 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences