Sample 3300023562

Basic Information
IMG/M Taxon OID	3300023562 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290734 \| Ga0247516
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI5 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	33713599
Sequencing Scaffolds	31
Novel Protein Genes	33
Associated Families	31

Dataset Contents

Total Genome Size

33713599

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2
Not Available	25
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0448

Long. (^o)

13.618

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F001024	Metagenome / Metatranscriptome	803	Y
F003050	Metagenome / Metatranscriptome	510	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003497	Metagenome / Metatranscriptome	483	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007739	Metagenome / Metatranscriptome	345	Y
F014264	Metagenome / Metatranscriptome	264	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018868	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F022151	Metagenome / Metatranscriptome	215	Y
F023797	Metagenome / Metatranscriptome	208	Y
F024050	Metagenome / Metatranscriptome	207	Y
F025423	Metagenome / Metatranscriptome	201	Y
F030619	Metagenome / Metatranscriptome	184	Y
F036126	Metagenome / Metatranscriptome	170	Y
F039163	Metagenome / Metatranscriptome	164	Y
F040634	Metagenome / Metatranscriptome	161	N
F044295	Metagenome / Metatranscriptome	154	Y
F058585	Metagenome / Metatranscriptome	134	N
F059015	Metagenome / Metatranscriptome	134	Y
F063428	Metagenome / Metatranscriptome	129	Y
F065397	Metagenome / Metatranscriptome	127	Y
F067292	Metagenome / Metatranscriptome	125	N
F068857	Metagenome / Metatranscriptome	124	Y
F068861	Metagenome / Metatranscriptome	124	Y
F091140	Metagenome / Metatranscriptome	107	Y
F097372	Metagenome / Metatranscriptome	104	N
F098663	Metagenome / Metatranscriptome	103	Y
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247516_102053	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2165	Open in IMG/M
Ga0247516_102121	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2142	Open in IMG/M
Ga0247516_103439	Not Available	1801	Open in IMG/M
Ga0247516_108014	Not Available	1162	Open in IMG/M
Ga0247516_108348	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Rhipicephalinae → Rhipicephalus → Boophilus → Rhipicephalus microplus	1131	Open in IMG/M
Ga0247516_108403	Not Available	1127	Open in IMG/M
Ga0247516_109535	Not Available	1030	Open in IMG/M
Ga0247516_111993	Not Available	861	Open in IMG/M
Ga0247516_112643	Not Available	823	Open in IMG/M
Ga0247516_112751	Not Available	818	Open in IMG/M
Ga0247516_112969	Not Available	807	Open in IMG/M
Ga0247516_113078	Not Available	801	Open in IMG/M
Ga0247516_113530	Not Available	780	Open in IMG/M
Ga0247516_113599	Not Available	777	Open in IMG/M
Ga0247516_114029	Not Available	756	Open in IMG/M
Ga0247516_114909	Not Available	721	Open in IMG/M
Ga0247516_114969	Not Available	718	Open in IMG/M
Ga0247516_115127	Not Available	712	Open in IMG/M
Ga0247516_118316	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	601	Open in IMG/M
Ga0247516_118893	Not Available	585	Open in IMG/M
Ga0247516_118997	Not Available	583	Open in IMG/M
Ga0247516_119003	Not Available	582	Open in IMG/M
Ga0247516_119456	Not Available	571	Open in IMG/M
Ga0247516_119853	Not Available	562	Open in IMG/M
Ga0247516_120206	Not Available	553	Open in IMG/M
Ga0247516_120644	Not Available	542	Open in IMG/M
Ga0247516_120723	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	540	Open in IMG/M
Ga0247516_121509	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	523	Open in IMG/M
Ga0247516_121897	Not Available	515	Open in IMG/M
Ga0247516_122300	Not Available	507	Open in IMG/M
Ga0247516_122420	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247516_102053	Ga0247516_1020531	F030619	LERNTYKRLTSLVKSHPTEQSSAPSRKGVHAHRHRGGDMSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCVKKLCHNIRGSSLHSKRWKIQPCGIRKDVVDCLCNLAVREPKNGFAFSRLSRSLPEPPARDAVRHLQSAAELASAPFPTSAAALESLRSFVSLSKRARRNPRTPRRLPSSNSSCLEWPATRGGIDGYLEHLGHELEVRGATQAEFARFAGDSLGAFCLSRARIVLRPCMGVSEDMRESYRCAGLLALRAEEKPFAMKATALRTPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAIEVVVEALVRRGAIRNADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDIYASRVASVGAQLNKGKTFRADHSWTACEILALPRESCEDRMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVMKSRFPWVKCDPRLHIPVEAGGLGYTGRGLAVGRSLRSRLGALVSRGPNAEIGAALIGKKPFREVGLYPHPLVLIPKPKAYWKAAKAVDQDLAPLGADLVSVPLESFESFKCQCIESELRLVEEGEKFQRKRVAGRPDRNKRSAVFRRLKVKPAKPLTRSGGVTSLKRWALACKSVRVMVDQDIASEIRERI
Ga0247516_102121	Ga0247516_1021211	F030619	VSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWARRSAPRGVAYQVDCLKKLCHNVRGHALHSKRFKLQPCGIRKDVVDCLCSLAVRAPENGFAFSRLSRSLPEPPQRECVRHLQAAAEMASTSFPTSAATLASLRSFVSLSKRARRNPRAPRRLPSSSSSCLEWPATRGGIDGYLEHLGHGLEARGATQAEFLHLAGDSLGAFCLNRARVFLRPCQGVSEDFRESYRCAGLLALRAEGKPFAMKAAALRTPGYKVRVVGVPDARTFVEGSWIRESSRLMAPGHWAIDSESREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVGVVIEALVRRGAIRPADHLMARRSLGLVGNTTWGFPDPIGEVVFSRGSPMGTPLSFVVLSWVNAWAVGRFGRSLTHGDDAVGRHRIGSDALRTYSDRVESVGAQLNRTKTFRADHSWTACEILALPRRHCEDGMSLFVPPSIPPPDLRAPVEADPRLENLWLRRMERVVKTRFPWVKCDPRLHLPVEAGGLGFTGRGLAVGRSLRSRLGALVSRGPSAEIGAALIGKKPFREVGLFPRPLVRVPKPKAYWSAVRTVDRELVPLGTDLVTVPLESFETFKCQLVESELRLAEGEKFRRKRVAGRPDRTKGSTVFRRLTVTPARPLTRRGGVASLKRWALACREARVTVDQDIASEIR
Ga0247516_103439	Ga0247516_1034391	F097372	MSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLEDLESVAGVDTPTTSAITQASSEEDGFRARRLELARELRQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247516_103439	Ga0247516_1034392	F068861	MPSITASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNAGARELLKHHPIGVWEELFVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247516_108014	Ga0247516_1080141	F001024	MRPETPLAVENGVGKLAASARMRLMSAWEREHGELPA
Ga0247516_108348	Ga0247516_1083481	F039163	MYIYMSVIVTERFIGHIGSEKTPIRIVQQCGILVNSLTTEPAIWKKQYLFS
Ga0247516_108403	Ga0247516_1084031	F007311	LRTRSTEGSSAQFGFEAETGRIRHPSCWPPHFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247516_109535	Ga0247516_1095351	F102319	MIPGPITSWSKSLLRYKTKPMVMDAVVANKTNLTKEENDGSSRAMLRSILLLVLHV
Ga0247516_111993	Ga0247516_1119932	F003383	VASLGCPVPAPFLLSRRPNPQVAPWFRAFGRAGGGRSSCPERRMPLALPVSASFRVTPENLAFSCPACDEGLGSPLVLHLRLYRRWTIESPRCSHHSAVPTYQSPGFPKSQPFGIADDSLSESPRTLNPPAPIDGYPSYLGSRTIRFALVRSPSCPGHLPSATAIDQFPGCPKSWVSHRSPIPRASSCPESWFLG
Ga0247516_112643	Ga0247516_1126431	F007311	SCWPPHFAVAPVMDCSMLDAWHSLLHADCSALHFVCPVQTTDLTRCSTLSALRLLRIAPRSTPCARAGHGSLRATDCSVVQHLELCPACGLLRHRDLAFHAALGLLLVRRFPLSVAHGLLRARRLTLHAGLRIAPYADILRPRAVYGLLHFRH
Ga0247516_112751	Ga0247516_1127512	F018933	DHVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT
Ga0247516_112969	Ga0247516_1129691	F067292	DESVVQPVLRPSATPEANLQLSLAIASSGCAGVESPTCVGESTSGSTVGQPSGSDRCFVLRLDRWHALGFRRVLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPYRRRTSDSHRLLRHPASPVLTHPTCVECFYLRLGLWCTPCFNWTLHRRLSRR
Ga0247516_113078	Ga0247516_1130782	F018868	MRSKTSHAAKSGVGEHTARESEAPNVCAGKERVASA
Ga0247516_113530	Ga0247516_1135301	F063428	TVSVEKLSLDVSRIIPGDRGKVGLGWLARLLLNQPKGGTAEAKFTGSSGAFARAKCE
Ga0247516_113599	Ga0247516_1135992	F024050	LPLGFGPSAVPAMAARVAPNVACLWRCWFQRGSELPRWLAFSCPACDVGLGSPLALHLRLYRRWIIESPRCSHHSAVPTGRSSGFPKSQPLGIADDSPSELPQTLNPPAPIDGYPSYLGSHTIRFALVESPGCPGHSSLATAIDQFPGCPKSWVSHRSPILRASSLPESWFLG
Ga0247516_113607	Ga0247516_1136071	F000203	RHTLFPVPAFGAPRGAAGFPPPFSTASGVTGLVAGPSKASRPMDFE
Ga0247516_114029	Ga0247516_1140291	F098663	RQSVFXEVRLTPLTDAIPVVNLYLTIYEFYIFSFGAKTSRYDPNGLGYKRAAKTFTKXSKIVPLK
Ga0247516_114909	Ga0247516_1149091	F036126	VNSASPKLALRLMRSRVNQPDPTFPQSPGIIRETRNLNFTFDC
Ga0247516_114969	Ga0247516_1149691	F058585	WRFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPSLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLR
Ga0247516_115127	Ga0247516_1151271	F023797	MPGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMRLPMSLESSLPQLAPQAIFRLRSNLSSS
Ga0247516_118316	Ga0247516_1183161	F016972	EIPVVNFYLTINESYRGSFGAKTSRYGPHELGYRRATKTFTKXCKIVPALIGLYL
Ga0247516_118893	Ga0247516_1188931	F068857	LRVLSSEDGNGLSAAKTHGGVKNAIEDGSWRPNGLEEEFRISTKR
Ga0247516_118997	Ga0247516_1189971	F059015	SRVHGTIQRPVCMRTFALQPDVRDKTTHRSPSPLFSMRQVIALSHLHHTSLSDRHPTGAGSSIRPFARSQRRFRHHCEVNVPGLHLRIHVENLCESVRLQALSLRSVSRPNRGAVNAQNPLSAPISNAPDLSPVSTPFQVLLRKPSGSKRSTGSISGSPSYRTFDCLLLPAASSFDSATDQRSKLASFGLTYRS
Ga0247516_119003	Ga0247516_1190031	F014264	SLAGSSGSGTMIRRANVIRDYFGRGGERGKIGRLVRVSFSIWKRAEHYNPEGSRGPDGE
Ga0247516_119456	Ga0247516_1194561	F040634	MHGTEHRISDRRAYSPQAPRLLAYPASASSLLDTPQLIFPKQDRSLVAAFPSPKMPSACADSTLRSMVLACNFAHWLAVRPARSAFWLPRHGLVSPSFRRHPRLKPVAFCTGPLCRLCRQVPLPVGSFRSLRIKALPGVATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0247516_119853	Ga0247516_1198531	F025423	SLAHHGHASALSTAFRSAVRLACLLPGNRFGGYRFNAFRRAAAYLSETGPLARNGLSLARNGSRFRGLHSGVKGPGLLLRYLARRFLCPFGLSAPLPELVRPNSRRFLASDPLHFRRLTHPAALPISTPLREFLLPRDQSVQWASLPSGPPSESARFPLAPRSLFYC
Ga0247516_120206	Ga0247516_1202061	F003497	PPPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPEPIRHFYLLEAFVSERPFARPQRLLSFENHRGEVKAPDLSLRRNSELFFQPVRPSAPTLGGVRHASGDVRRTKPVAVSRAQNSQTSIQLSLPFRTFIPPDRSAQSAAGSEKLTLVPGPFFLRSPKASITF
Ga0247516_120644	Ga0247516_1206441	F022151	NIDPLLVLLITAGSGERGTIGRFGSVSLSAGIRVNALIGRGPKAPSGSGNLKGGRGRLEGTGQRVSRVEFARFGAN
Ga0247516_120723	Ga0247516_1207231	F091140	VALSLSEPLTARSDGGCYPPSHPEESGLSSVANPSTQPAGPVSRHRSSSQGATAIIA
Ga0247516_121509	Ga0247516_1215091	F065397	VQVRVFVSRLYSPHKLTLVMAILMTKATTDMRWTEVAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAEDDNERFASAEC
Ga0247516_121897	Ga0247516_1218971	F003050	MESAKAEAVAGEGKAVTSRRSSFGRRCGAPGSVEAVAVKPVAVEQTGKAHGSPKRGAQYGFMPVVSSAGTWV
Ga0247516_122300	Ga0247516_1223001	F044295	GERAKIGRIRKADRTAATPIERFDPEGAKIPGGEWRWGEQPDEFIGGSATGLKRGSGGDWGKPIPAVELKDRTGIEAGDRDSEVAGRDH
Ga0247516_122420	Ga0247516_1224201	F007739	KQTAESKIDVVCFKIIPGDWGKVRSGWLTWLLLKRAARHGSGGRIHRFLWRCSHTVKCE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023562: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI5 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences