NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023554

3300023554: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023554 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132854 | Gp0266682 | Ga0228692
Sample NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6975991
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW13331
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1
Not Available4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED1201
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater Microbial Communities From Monterey Bay, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000055Metagenome / Metatranscriptome3096Y
F000080Metagenome / Metatranscriptome2485Y
F000798Metagenome / Metatranscriptome886Y
F001240Metagenome / Metatranscriptome739Y
F007724Metagenome / Metatranscriptome346Y
F017650Metagenome / Metatranscriptome239N
F020014Metagenome / Metatranscriptome226Y
F033451Metatranscriptome177Y
F041805Metagenome / Metatranscriptome159Y
F044893Metatranscriptome153N
F063740Metagenome / Metatranscriptome129N
F072359Metagenome / Metatranscriptome121Y
F087240Metagenome / Metatranscriptome110N
F102090Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228692_100162All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW13331612Open in IMG/M
Ga0228692_100999All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda885Open in IMG/M
Ga0228692_101086Not Available857Open in IMG/M
Ga0228692_101430Not Available775Open in IMG/M
Ga0228692_102685All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium614Open in IMG/M
Ga0228692_102842All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED120600Open in IMG/M
Ga0228692_103090All Organisms → cellular organisms → Eukaryota → Sar578Open in IMG/M
Ga0228692_103512All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium550Open in IMG/M
Ga0228692_103766All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium532Open in IMG/M
Ga0228692_103844Not Available528Open in IMG/M
Ga0228692_103994All Organisms → cellular organisms → Eukaryota519Open in IMG/M
Ga0228692_104031Not Available518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228692_100162Ga0228692_1001621F063740KIMKKLAFTFVLLLSFACSKDDNSTPNNLVDPIIGSWQSSFALTDENEAGQVVDISANGIIIFNADGTGSRNLLVTNDGGEPQESNETFEWENLSSALNSSETTQNYAINGDAFTAVFTSNFSSLVLSEDGGDLQISMTRN
Ga0228692_100810Ga0228692_1008101F000080MAEWMENVEKSIARIMADKVYTSSEFKRERDTFNSLCKDLERAEVRKWLQQILEILMAERAKEQKTTEFGKLDTLIKKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKNKAQERLQLLTETKDAFIGYAEDSETIAGDFDKAEEEIKKVKKIFNLEAANADLSKRQEILKNTDDTINGLFANINKNYNTMAITIPDDKKKILTKEIKAVEEKLEVLGRFKNTVQVIVDLVNSLTAFD
Ga0228692_100999Ga0228692_1009991F000798VKRIQDGWEDTKNKATDRLQLLNETKAAFIGYAENSETIASDFEVAEEEIKKVKKIFNLDAANADLKKRQDILKKTDDGINGLFTSINNNYNTMCITIPEDKKKGLAKEIKAVEEKLEVLGRFKGTVGKIEELVAALTAFDNSLKTLDTWKDAATAELKDIKEASGAMLPEDRVARTMDLQEDIAAKLEILAANAKVELDLLPQGDKVPADAQAFKDELKRITDYVKKLQGDTKVECDKYSNDVKYWAEYRTGIKEFNPWLAGAEKSAAEGLAKPSDLGEVKALDDKVKTFEKNC
Ga0228692_101086Ga0228692_1010862F020014ELTFSNWLNNSYKDEPRPEYAPKKNSVNKPRAASPPTVATIQRGTLPISLILIIVIKK
Ga0228692_101430Ga0228692_1014301F102090MGLVKLTTNKVVQADSILQLTAAISSNTLTIDVLYALDMGSNKLAKANVVYTKGGSNSFTKTEAEYLEEFASAFGLAMGTSGPALVGPIVEQKVTSTGVLVGTITP
Ga0228692_102302Ga0228692_1023021F000055NILAVAALLAATNAIEVQSEKTGDWFVDKTPPPTATGTPSSGYFGADEDDVMNNIFNHYAVPITNAAGEPTGHKVLYKDGCQKACAEILLVTKQVSEAKMESYMAEFFPRTWAKFDLNNSGEVDITESHTFMRSLLGRLNQFVLAPGSLTDIKV
Ga0228692_102685Ga0228692_1026851F001240KFLAIAALLGLTAARQKPEATAPYNAWESVKDGAADGKYERVVTSHFSADSDDIFMRSMIKKYAVEGRTDSQTLDDGTKIGGEPTGKFWMTKSTTLAASKEVLNTHKGLSGGALASYLDTYFDKAWAHFDVNKGGDLEVIKMPQFMRFLASDQWMSLKESG
Ga0228692_102842Ga0228692_1028421F087240FSFGQDAEKNVYEVSYLKVKTGFVREFESAFRNHVKSFYKDENKPYLRKVTHGHRSGEYLLITGPIKMSFMDQKNKRRVDDWNKNILSKAEFKDSNLYRNHPEYSSMSKSESGSGKVVFVRGFKQESGKTTFDILSKLKKISDMSEGCNPYNVVTPIAKSKGEPDFYIVRHLSSMGEFDEDDLFDNKNCNVFEMFQKKM
Ga0228692_103090Ga0228692_1030901F033451EEQQITLDNGFTLAPTDAPGGIAGTGISAVQSGAAPPPPPEANLAYQKKGEESSGVIRLIDLLINDVEKDIQVADLEEKDAQKDYVRFMDNAAKKRAEDSKSQTDKEGALADTEEQLVNDKQGLKNKKMDLMKTEQLIGALHSECDFLLKYYDVRKEARTGEIDAMGKARDVLNGADYGL
Ga0228692_103512Ga0228692_1035121F017650KTMKFFALAFAATVSAVTIRGDFFEARDNGTGPLDKKYERVLPVQFADASDDLFMRSMIMNYAREGKNEDGSPNGVFTMTEAQTRGASAEVLATHKKMSAAETKEYLTTYFPRTWAHFDVNKTGAVGVEVLPQFVRFLASDQQLSL
Ga0228692_103766Ga0228692_1037661F041805LAAIMLVGTSAATALMSQEQRHERALRSIHDAMSLIQVGSQEHTYLHNALVTMTMKTDAEILESHSQIVNVPIDEKRAISFKVSPTYTLDEVNSVTLKSFRKVVGYDTFDSIRQHNRNETKDPSSYYNVTISLMAKRKVDPAALTPAEVPSGAHSLAAKLDKGFPYDD
Ga0228692_103844Ga0228692_1038442F007724MHIYKLVFDTEQQGKQVLIDNNVWEEVTEEGVTFMQYINGTKAVVYIGKVIKTQGTYDPDGHEITPPIYYDGVAYDIMSTDDLD
Ga0228692_103994Ga0228692_1039941F044893DKPSCIMKIALFGLCVLLLVSVPQLEATIAISVGALALTAPQVTGIIALKALALGAFGKGFLISRLLSRRGRRSADERFNIVGEIEADLVSQMASNELEQCTQLLFCAVAAEPQISLDKNVDELRRMVTRIPGKYKKAHQIGKLSASEKCVAAYDCSIKLENLVAVINSI
Ga0228692_104031Ga0228692_1040311F072359QSVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ
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