NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023549

3300023549: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 63R (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023549 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132854 | Gp0267193 | Ga0232116
Sample NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 63R (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5684311
Sequencing Scaffolds12
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater Microbial Communities From Monterey Bay, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000462Metagenome / Metatranscriptome1107Y
F001293Metagenome / Metatranscriptome729Y
F001926Metagenome / Metatranscriptome616Y
F004023Metagenome / Metatranscriptome456Y
F018735Metagenome / Metatranscriptome233Y
F030105Metagenome / Metatranscriptome186Y
F040511Metatranscriptome161Y
F046404Metagenome / Metatranscriptome151Y
F052632Metagenome / Metatranscriptome142Y
F061888Metatranscriptome131Y
F067105Metagenome / Metatranscriptome126Y
F070574Metagenome / Metatranscriptome123N
F074949Metatranscriptome119Y
F093205Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0232116_101161Not Available751Open in IMG/M
Ga0232116_101773Not Available636Open in IMG/M
Ga0232116_101886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter621Open in IMG/M
Ga0232116_101926All Organisms → cellular organisms → Eukaryota616Open in IMG/M
Ga0232116_102022All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata604Open in IMG/M
Ga0232116_102204Not Available584Open in IMG/M
Ga0232116_102660Not Available542Open in IMG/M
Ga0232116_102682All Organisms → cellular organisms → Eukaryota → Sar541Open in IMG/M
Ga0232116_102824All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina531Open in IMG/M
Ga0232116_102948Not Available522Open in IMG/M
Ga0232116_103005All Organisms → cellular organisms → Eukaryota518Open in IMG/M
Ga0232116_103259All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0232116_100439Ga0232116_1004391F018735LDKRKTLNAACDASRSKYAERDAHCDEEQEQYEQSFCPHRQGFHSTCAEYQGCHILNEEQFKALIQDVLYAADSRKIDWKAIHKIACYIKVLVSDGTNQERTWALENCESGDLNTLATILTGFNESNYLSLIIPEISGNVSCWDLDVPPLIDFKECDMSSVHQYPCTETWMNRYQGLESPSNCVQCAALPEHMQYSDKDYQQSTHARNTEYGGGWIFVNELGRSTEDINDLSEIQPEGYFLPQYNMKGLRWNEVLVQRVSPNWCDSWGRQSSKWVEDDGASMCVQSDNDHVYCMSNHEGHTWRQQPTSHFAALCGKEGQPACDCWPFEEGLEHVCFAHDAASTSVHAAKNVPA
Ga0232116_100527Ga0232116_1005271F000462EKIDVLKADIQKAIATAAQLGKEIAAHDEDISVWNGDIKAASKVRSLEKADYDALHKDYSESVDALQRAIAVLKKQAYDRKQASSLMQVSALKQLSLIPQEAKKMIDAFLSTGEEPTEGLAVSAPEAYGYEFQSHGVIEMLEKLLDKFIDERTVLEKEEMNTKHAFEMLIQDLDAQIEQATQDRTEKAALKAKTLQAKADAEGDLVDTTGTRDADMKYLADLTATCEQKASDFEARQELRAEEIVAIEKAIEIISSNAVSGNADKHLPSLIQKSALAQLRADGRSANQQRVAAYLQQQAKSLNSRVLSAIAQRVSDDPFKKVKKMIKDLIV
Ga0232116_101161Ga0232116_1011611F067105EPTSAPVENTTPVETTVETPAVQVETAAPVEAPKATNQEELMKLVIDQENELSGTKSALEKAHAELMKLQNAWKEREDNEKLQTKSKAEALSKALVDSWSASLPADMMTDENKKAIFALAQNFPQESVKMMEIAHKASKKYKSDMDSFAAQQQAKEKRHLESRVMDIVTKKRRIVPDTTSVVHAASVKKARVANPFSFDASKTSSSMNSVRDRNPQLFSALSGFSTGNLRDRMGQIAKINGNN
Ga0232116_101773Ga0232116_1017731F070574MRNIIMTAALMVALTGTAQAENYDNTTVSMAAESATMGISLSTNDTSRSIDVYTMGRSLDFGAGVSDNGTNRDYSVSVGKTLDVLNVGPVGTYLSGEAEYNWGDTFTKSEMHFTPTVGGKMDLGLIAPYAEVDYMLKSVEGDFTSIDKATPNFTIGTKVALGTSTSLN
Ga0232116_101886Ga0232116_1018861F052632MLINGVNLMHHLNRCRLKLQKHTLEEKQLRSPNLLMQPKNSVEA
Ga0232116_101926Ga0232116_1019261F030105FIVCVFLCPVLPTMSMVRVLATSSTVAVALNATNTPSCGVNQKVSGGEVVSLSDGTYDRCISVITPTSAVKPMPVLFWFHGAGGNAAHCGPDDLVEAAEKHGFALVCGEATQNVFGSGGEWDIPAKITDESGTPCDNSDSVEVGYWKSILNHLKQSPEIYDAQKLFTSGCSMGSAFSGYSANCLKHWDSQQISAFATHSTGLKYK
Ga0232116_102022Ga0232116_1020221F004023KSGIFTFLIFQVVVFLGLVLCCTHLSDITLTIAANILHTFFAFKGKAYWXLFTDKQLNTDTIIRLAYAHYVAAFFMFYLAILHGVDMHHDXKNEYAYDGIETELSXFDEALSSELAGTIDVLLIVGFFCYLXFPEPEALTYEIFMXGDIGFVTDVRFYGVAPHXYFRPFMAXLIACPHHKTGIFGFAVFFGALFYQPVIN
Ga0232116_102204Ga0232116_1022041F074949ISSYCFDTKSMKFGIATLSGLAAAALVEDDVVLLSTASVRSSVGAESSLGGLIAFAQEDHPRKASQLLQQFAKNTLNRGEEVDDITKQKLKEIVAQLTNNTWMALEQSHRRDQDLINKHWRAIQICGDKHIAHLQQDVDGLEVQQVRTHEMDMIMCRGLPNHTNPFASLLQNKAQPDVVNGHVNTQQDGINYVP
Ga0232116_102660Ga0232116_1026601F018735MSSVTHYPCGPTWMQRYEGLESPSHCRECSALPEHMQYSDKDYQDVDHARNTDYGGGWIFVNELGRSAQDINDLSEIQPQGYFLPSYNMKGLRWNEVLVQRVSPNWCDSWGRQSSSWVEDDGASMCVQSDNDHVYCMSNHEGHTWRQQPTSHFAALCGKEGQPACECWPFE
Ga0232116_102682Ga0232116_1026821F001926LRFRIVTQKLRDVRHEDIPDINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPKSEIKERIRKRYERKRIKIEKLLTLGYTTSGDP
Ga0232116_102824Ga0232116_1028241F061888MTLNPFVYGSASSLKCFDEAAPCTLEQESMNVIANNPQDKYVPWLVCMDSKGDQLDTCDTQAGVSKPASSAPADLLDQYLKVDSPIQGTPTVYVDGKNVKTSYSAIKKALCKADSSLKACASNFMPEG
Ga0232116_102948Ga0232116_1029482F040511SKCCLTEPSSSDGGSGPSETLAPSQGTFWNTFTYKGEVDFNGVYYQGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYNPASLNSAAFDTSVFDVPEVCKTTTLTCAFP
Ga0232116_103005Ga0232116_1030051F093205VVFRVTMAPRALFSSLLIGASANQCPGSGSLIHAKMQVTSTASASCADVQAEIEARAQGENGWVDPHNNGVYSLLGSDNGVIQTQRTTNPATSVGGQVYTDKQTFALSDVDGGCQVMGCSESQGTSVGDFSTNYCDLRNLFCGSADGCKTVSKDFSHSETSHHGSIGAGHDA
Ga0232116_103259Ga0232116_1032591F001293MIPNSFICKLINVQAREKENNEKKIRNEDEISKLTKAPPKDTAALDKRSVLAKVNSQESG
Ga0232116_103259Ga0232116_1032592F046404MEKMMNEKMPKRRIQIRELQKQEIEEKQERGLLIRFQISSVILLINL
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