NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023548

3300023548: Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 677-SSYellow



Overview

Basic Information
IMG/M Taxon OID3300023548 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133538 | Gp0295815 | Ga0256727
Sample NameHydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 677-SSYellow
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delaware
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size272241056
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available7
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Fe-Rich Mat Reference Genomes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationUSA: Loihi Seamount, Hawaii
CoordinatesLat. (o)18.905558Long. (o)-155.256977Alt. (m)N/ADepth (m)1271.23
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004651Metagenome / Metatranscriptome429Y
F007072Metagenome358Y
F010945Metagenome / Metatranscriptome297Y
F018816Metagenome233N
F024208Metagenome207Y
F029285Metagenome / Metatranscriptome189Y
F049761Metagenome146Y
F059103Metagenome / Metatranscriptome134Y
F061392Metagenome / Metatranscriptome132N
F066904Metagenome / Metatranscriptome126Y
F074743Metagenome / Metatranscriptome119Y
F078263Metagenome / Metatranscriptome116N
F088125Metagenome109Y
F094884Metagenome / Metatranscriptome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256727_1006406All Organisms → cellular organisms → Bacteria4637Open in IMG/M
Ga0256727_1014405Not Available2667Open in IMG/M
Ga0256727_1020686All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales2091Open in IMG/M
Ga0256727_1039541All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1403Open in IMG/M
Ga0256727_1087485Not Available900Open in IMG/M
Ga0256727_1101227Not Available832Open in IMG/M
Ga0256727_1102788Not Available825Open in IMG/M
Ga0256727_1103575All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon821Open in IMG/M
Ga0256727_1130311Not Available726Open in IMG/M
Ga0256727_1134149Not Available715Open in IMG/M
Ga0256727_1140946All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium696Open in IMG/M
Ga0256727_1171042All Organisms → cellular organisms → Bacteria627Open in IMG/M
Ga0256727_1175237Not Available585Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256727_1006406Ga0256727_10064066F059103MISREFKSLVVQLESLDAATAAWLVDFCGHLQHAIWQAYGDEIEAYWTATEPEQPVTGPLSPITPRKRR
Ga0256727_1014405Ga0256727_10144052F007072MKSILNKKGQLTLGDAPTVVLLVGLVFLVMATIALVGDKYGDALKVSNTGAGCNATDTSNCGVAYNVTQDLNTEIANNTSIAGIVLTISLVGIVLTVLMGVFLAIRTRRI
Ga0256727_1014405Ga0256727_10144053F007072VKKINMSKKGQLTLGDAPTVVLLVGLVFLVMATIAFIGEKYGAALTSGSVAQNVTTALNTEISNNTSIAGIVLTISLVGIVLTVLMGVFLAVRTRNI
Ga0256727_1020686Ga0256727_10206862F061392MIVKRLSIFCAVFIVGLFITLQTIASGLDEPDPTFKLAATLFPIDGGQLFIGNVDRDKKTFRLHLRHIGKNSKWIYYYASASTFVNEDGEVEPDNAVASIEYPQYTASIVGNTFRKARVRILFIPRGEGKGFFKEAGHVIFQKCATKAFEAKDWKCTGWEYLGKLPGFP
Ga0256727_1039541Ga0256727_10395411F078263MELLHDSSGLVGSLDCQLKRLEEKIDTSRPVALMKDLHRLDDEIRHFKDVEITTNTVVSSVKEQNETIQRLEEKTRNKYTEMASQIRETEVIVADKHKDVVSKINDISSRIDNLEKKIDSAVRELKSEARKTSFLRKLLWLD
Ga0256727_1087485Ga0256727_10874851F029285MKDSADYNLYKCPYEHLKKECGHELHGPEGYENTYGVWCSCGFRAPVFYL
Ga0256727_1101227Ga0256727_11012272F010945VTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVASAGDSDFEGILEAARQGEDVRHVAKMARSIFRARGWPNEEHPETVRDWLESHNIPIIDVPIHSDPDEQRKHVAAEMERIRLAGWGKGWSIT
Ga0256727_1102788Ga0256727_11027882F066904MRVRSRINRVAVHDVPKQEVLVHIQRLGHRVELAQPQARFDFVIGGRARLALRVAYPSASRRRVNMGKRTYEYVYRAWNFNFHHRGEVGECYCDLFICVPLLREQRTNLAETFLLPWDAIGGKTFYLPDSRRPYAGKFAVYRNAWHLLRDAAARASDI
Ga0256727_1103575Ga0256727_11035753F094884MTKNKLIGSTYVNIIKDEKGEIKFAYGYEVDDNEVSLNDLAMLNSFLDKIKDMAKQDFQERLDKNDKEFSIESDGTQ
Ga0256727_1130311Ga0256727_11303111F049761MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSKYDLTLYGQDWETVQGFEVGETAIITINQGNLKKDKTGQYSTD
Ga0256727_1130311Ga0256727_11303112F004651MTTSETIENHYGAAHAHLSDDELLAEMEHIGAILDGFKNTLGHLEQEAYRRMEEKKATSIPSETYICEMETGFKYDQMSFGPLKEVFNEADLKKCLTPAHTEETKVADKWTTATVKSLAVKYGAEALRILENARTESRGRLKFARRETR
Ga0256727_1134149Ga0256727_11341491F024208MERLTIARTRRWGNSSIQINNVYSALRSKVRMDDVIRMANDMIAKEQPITNEEIENEVLCSRDNGTTEFIHRVEKKGKRSI
Ga0256727_1140946Ga0256727_11409461F074743MIDLQDKDKRGRLLKAIKTSREAMQPFRRVRTELVRDYVGSWYSETGARNKTLTNLMNQTARIYTIALAANNPQVLVSTPREVNLPFARRFEINLNTLISDMNLDQTFRQIVLDAFFCIGCGVVMMRDTDTRFHGLIEAEEDVWLDPGEPWLNRVALDDLILDMSARELTKMRFCGHRYRADFEKVMDEPGYSKKAKAKLTATSRTAKET
Ga0256727_1171042Ga0256727_11710421F018816MLNNFAATQGGGKDTVTTTTILDGTIANADVASDAAIDTSKINYGNTLEIEGSSGDLALEIDNNVT
Ga0256727_1175237Ga0256727_11752371F088125ARHCTCAARRRKMMYLLDAGRVTLFSIFLVATVRFFYLAWQTRNAHSDDVVVQQHFMEHAVAASLAFIGSLLGTLYSIVHLFSAEQGVLSETPFTISMLFLLISGIAFMLHMIKEQTPHHLFYIRENGEDD
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