Sample 3300023244

Basic Information
IMG/M Taxon OID	3300023244 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0255719 \| Ga0222627
Sample Name	Saline water microbial communities from Ace Lake, Antarctica - #93
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300023244 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0255719 | Ga0222627

Sample Name

Saline water microbial communities from Ace Lake, Antarctica - #93

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	152968368
Sequencing Scaffolds	28
Novel Protein Genes	31
Associated Families	15

Dataset Contents

Total Genome Size

152968368

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → saline water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	N/A	Depth (m)	13
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010230	Metagenome	306	Y
F029620	Metagenome	187	N
F031722	Metagenome	181	N
F039448	Metagenome / Metatranscriptome	163	Y
F042665	Metagenome	157	N
F054792	Metagenome	139	Y
F057778	Metagenome	136	Y
F060609	Metagenome / Metatranscriptome	132	Y
F067269	Metagenome	125	N
F069498	Metagenome	124	Y
F077964	Metagenome	117	Y
F083739	Metagenome	112	Y
F096357	Metagenome	104	N
F098516	Metagenome / Metatranscriptome	103	Y
F099973	Metagenome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0222627_1001880	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	6134	Open in IMG/M
Ga0222627_1003387	All Organisms → Viruses	4225	Open in IMG/M
Ga0222627_1011341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1827	Open in IMG/M
Ga0222627_1011534	Not Available	1803	Open in IMG/M
Ga0222627_1011600	Not Available	1797	Open in IMG/M
Ga0222627_1013414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1619	Open in IMG/M
Ga0222627_1021438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	1152	Open in IMG/M
Ga0222627_1022409	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
Ga0222627_1024465	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
Ga0222627_1024972	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1035	Open in IMG/M
Ga0222627_1027132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	978	Open in IMG/M
Ga0222627_1027479	Not Available	969	Open in IMG/M
Ga0222627_1028689	Not Available	941	Open in IMG/M
Ga0222627_1029691	Not Available	919	Open in IMG/M
Ga0222627_1030145	Not Available	910	Open in IMG/M
Ga0222627_1030189	Not Available	909	Open in IMG/M
Ga0222627_1035079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	820	Open in IMG/M
Ga0222627_1035827	Not Available	808	Open in IMG/M
Ga0222627_1036024	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	805	Open in IMG/M
Ga0222627_1041833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	724	Open in IMG/M
Ga0222627_1041879	Not Available	723	Open in IMG/M
Ga0222627_1053165	Not Available	612	Open in IMG/M
Ga0222627_1053776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11	607	Open in IMG/M
Ga0222627_1055382	Not Available	594	Open in IMG/M
Ga0222627_1063227	Not Available	541	Open in IMG/M
Ga0222627_1065686	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	527	Open in IMG/M
Ga0222627_1066884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	521	Open in IMG/M
Ga0222627_1066948	Not Available	521	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0222627_1001880	Ga0222627_10018809	F099973	MNEIIKKRISESKGKEIKIFLNNGFRFAGKVTNCDDKYIEILDYVSSAYKIIDIDQINNIEVQKXVXLFRLFIFIM
Ga0222627_1003387	Ga0222627_10033871	F067269	MIKSHTGSYTRALDRQLPDSDACFFWDTTDSKKKRKGYQDGLKYDAVSGTTRERYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNTPESEDTEELYAMFDEWIDNNNNN
Ga0222627_1011341	Ga0222627_10113412	F098516	MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVRRAQSRADAQDANEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQLLGFTVTTGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTSDFVRVSDAPAWELATVLTDSPFLAEVTQDPGEDQGQAAWHTAAGSAGFSLARLAS
Ga0222627_1011534	Ga0222627_10115344	F029620	LRMLPASSGGAAQVFPLRKGLIDITTGTVTDPVSGRRPLIAHCVADGSLTLTWSDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222627_1011600	Ga0222627_10116002	F031722	MDETATTPTQTPTQKVTKPMFYPEQAAAEKLGLNKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKP
Ga0222627_1013414	Ga0222627_10134143	F096357	MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSLWLKLDTPERDKCAIIGKRMGYKANTVRDWRRKGWRSG
Ga0222627_1021438	Ga0222627_10214383	F096357	MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIAKRMGCKVDTVREWRRKGWRSG
Ga0222627_1022409	Ga0222627_10224092	F039448	MNTTKAIELAMAETLRKYAQMGEDVTIRAWQSLAADGSWKTNPDRKFPMIDVRCSPPGHDDNQSTLQVQCAILMGTNTDDDKSHAFIAGMYEAVQGVCDTLFAQFRTGVFTGDGKEEIAYFLARVVAETSADAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRSDF
Ga0222627_1024465	Ga0222627_10244651	F069498	GVIEVDAFDEMFGKPDDDPEPTPEQGGMSLEQLLGGGEDEYD
Ga0222627_1024972	Ga0222627_10249721	F060609	MKKEKMRESLKPTTDPLTRREFCNKAIKRSSIAAAVGVSGYLVYKKPAVRSFFGASDAYAATTGPGKFSLKGDSN
Ga0222627_1027132	Ga0222627_10271321	F010230	VKFVQGQPLNTPAGKSAKAVQFRQVWLKLVPLLVSINGNEVRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSPQVESKLVPLLVSINGNELRLLQNCQVAVKLMPLLVSINGNELRLLQYRQVK
Ga0222627_1027479	Ga0222627_10274794	F042665	PPHSAHRYGRPKTMTPPKMSFATLILLSSVVTVVVTLGVIPLLALTGSVAGLFFAPAAGMAAGYSAARWLGGYIEDKKNN
Ga0222627_1028689	Ga0222627_10286891	F069498	THGVIEVDAFDEMFGKPDEEPEPTPEQGGMNLEQLMAGGADD
Ga0222627_1029691	Ga0222627_10296911	F077964	YYYNYNIEEVQKEIEGSEETETFYQYNYVTIQGKPTKCKVLEAIKASESSTATEDVEAVATERSAALTQLENIAEMTYVQLDTYVENTFGNLATAQKTALKKLYKTVLAMLKQMDLSK
Ga0222627_1030145	Ga0222627_10301451	F031722	MHIDETTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222627_1030189	Ga0222627_10301892	F031722	MKKDETATTQTPTPTQKVTKPSFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIAMGDLKP
Ga0222627_1035079	Ga0222627_10350792	F010230	LQFRQVEPKLVPLLVSINGNELRLLQLYQVKPKLVPLLVSINGNELRLVQLYQVKPKLVPLLVSINANEVRLLQLFQVWLKLVPLLVLINGNELRLLQFRQVWLKLVPLLVSINGNELRLLQLYQVVSKLVPLLVSINGNEARLLQLYQVKPKLVPLLVSINGNELRLLQLYQV
Ga0222627_1035827	Ga0222627_10358273	F042665	SFATLIMLSSVVTVVVTLGVMPLLALTGSVAGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222627_1036024	Ga0222627_10360243	F057778	MDEQAIEIKENLADYYANPEQYTFADLEEIFQDRDPFEFLXKWYGSMGENGMVENN
Ga0222627_1040096	Ga0222627_10400961	F010230	MPLLVLINGNEVRLLQFCQVEKKLVPLLVLINANEVRLLQLYQVWVKLVPLLVLINGNELRLLQLFQVWVKLVPLLVSINSN
Ga0222627_1041833	Ga0222627_10418332	F010230	LLVTINGNELRLVQFRQVWLKSVPLLVSINSNEVRLLQFHQVDSKLVPLLVSINGNELRLVQSRQVAIKLVLLLVLINGKELRLLQLYQVELKVVPLLVSINSNEVRLVQFRQASSKR
Ga0222627_1041879	Ga0222627_10418792	F031722	MHIDETTQTPTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222627_1053165	Ga0222627_10531652	F067269	MIKSHTGSYTCALDRQLPDSDASFFWDTTDSKKKRKGYRDGLKYDAASGTTRERYRGYDIVCTRLKNSNFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNTNKTKTKTEQL
Ga0222627_1053776	Ga0222627_10537761	F096357	GYIMNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWFLCYQEDLVQAESERLRAARKRNPRLILAAALVVASVTGKLSEEQKNMAFYFTRYVEAHEYEIDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDKPERDRCAIIATRMGYPVDTVRKWRRKGWRSG
Ga0222627_1054596	Ga0222627_10545961	F010230	QGQPLNTPAGKSAKAVHSLHALTNVVALLVLINGNELRLVQFAQVEVKSVPLLVLINGNELRLLQFFQALGKSVTLLVSINGNELRLVQFRQVSPKLVPLLVLINGNELRLVQLYQVKPKLVPLLVSINANEVRLVQSRQVWVKLVPLLVSINGNELRLLQLFQVWVKLVPLLVSINGNELRLLQFRQV
Ga0222627_1055382	Ga0222627_10553821	F042665	MTPPKMSFVTLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222627_1055382	Ga0222627_10553822	F031722	DETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222627_1063227	Ga0222627_10632272	F031722	DETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222627_1065686	Ga0222627_10656861	F054792	IKMATQKIDIKKLDIGILKLKIIGDSPYLPEPMDMAVLEKYNAIKSKKNYKKDDISEEEKVKAKFYYCEDGKYGIPARAIYNSMIRGSSYLFDIKQGGMRNIKEGVTIKGDILPLKSKKQAEVCHWGRTSGMKGSPRKILRNAFYDWEVEITVEFNKATLSAEQIVNVLNWAGFH
Ga0222627_1066884	Ga0222627_10668841	F029620	LRQGLIDITTGTVTDPVNGKRPLIAHCVADGSLTLTWQDTSTTLVDFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222627_1066948	Ga0222627_10669481	F083739	ITELKEKYKSYPLFQITDNTTGEQFIIRGSNWDEFSQIGNVKPGSENRVPLNMVKAYVVWPEIDQQDLEYNRSGNWQPGRIVALAEQIQEVLGYNKAFTVKKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023244: Saline water microbial communities from Ace Lake, Antarctica - #93

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences