NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023226

3300023226: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 1-5



Overview

Basic Information
IMG/M Taxon OID3300023226 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131983 | Gp0256464 | Ga0224536
Sample NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E2 1-5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69118274
Sequencing Scaffolds25
Novel Protein Genes27
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Prolixibacter → Prolixibacter bellariivorans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatland Microbial Communities From Stordalen Mire, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0468Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F002347Metagenome / Metatranscriptome568Y
F006412Metagenome / Metatranscriptome374Y
F007212Metagenome / Metatranscriptome355Y
F013964Metagenome267Y
F014092Metagenome / Metatranscriptome266Y
F018530Metagenome / Metatranscriptome234Y
F022789Metagenome213Y
F028976Metagenome / Metatranscriptome190Y
F029963Metagenome186Y
F031772Metagenome181Y
F051240Metagenome / Metatranscriptome144Y
F053900Metagenome140Y
F057004Metagenome / Metatranscriptome137N
F061452Metagenome131Y
F063193Metagenome / Metatranscriptome130N
F064774Metagenome128Y
F069503Metagenome124Y
F079498Metagenome / Metatranscriptome115N
F079956Metagenome / Metatranscriptome115Y
F086359Metagenome / Metatranscriptome111Y
F091193Metagenome107N
F093188Metagenome106Y
F094174Metagenome / Metatranscriptome106Y
F100040Metagenome103N
F102123Metagenome102N
F104597Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224536_1000310Not Available2391Open in IMG/M
Ga0224536_1004453All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium980Open in IMG/M
Ga0224536_1004760All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium960Open in IMG/M
Ga0224536_1004849Not Available954Open in IMG/M
Ga0224536_1005830All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium897Open in IMG/M
Ga0224536_1008248Not Available799Open in IMG/M
Ga0224536_1008538All Organisms → cellular organisms → Bacteria790Open in IMG/M
Ga0224536_1013425All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium679Open in IMG/M
Ga0224536_1013432All Organisms → cellular organisms → Bacteria678Open in IMG/M
Ga0224536_1015539Not Available646Open in IMG/M
Ga0224536_1016698All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Prolixibacter → Prolixibacter bellariivorans629Open in IMG/M
Ga0224536_1018832All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria602Open in IMG/M
Ga0224536_1019923Not Available590Open in IMG/M
Ga0224536_1020052Not Available589Open in IMG/M
Ga0224536_1020200Not Available588Open in IMG/M
Ga0224536_1020431Not Available585Open in IMG/M
Ga0224536_1021004Not Available580Open in IMG/M
Ga0224536_1021097Not Available579Open in IMG/M
Ga0224536_1023084Not Available560Open in IMG/M
Ga0224536_1024446All Organisms → cellular organisms → Bacteria548Open in IMG/M
Ga0224536_1024597Not Available547Open in IMG/M
Ga0224536_1025232All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium542Open in IMG/M
Ga0224536_1027573Not Available524Open in IMG/M
Ga0224536_1029511All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium511Open in IMG/M
Ga0224536_1030466All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224536_1000310Ga0224536_10003103F018530MTDVNRDTLQGLPGVTPAFRSFVQMVRGYTRDFPELNRLIAGEESTDRQIAWSVLDALSQFNGTPHFTQMSIDELLQRNQHNLMCRMTVISLIEQVGLLQTRNHINYSTGGINVGVNDKTPLLMQWLQYYRGTTDQLMQRVKVSLNIEGILGPSNSGVMSEYWAVNCTYAQF
Ga0224536_1001966Ga0224536_10019662F100040MHIYQKYSLIVLWKILFSQATECIWENAMTKKETRPDLMKIISLGRNGIIDPDYMERWGQFKEDWTEADLATWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILRAEERGLC
Ga0224536_1004453Ga0224536_10044532F064774RELLAKLDTIPPVTMVQVAPVDLASFDQLCMAVRQ
Ga0224536_1004760Ga0224536_10047602F093188MPVDLPQNRSATPSLETLVDEIVAHGEDQLLEPDIARWREDLRKRLEQIQQHPEQGLGFIEEHVRQSSLQLQRLLVQKAMQAKADQADEKCPDCLGPLGHKKRRVPRWIDAYCGKVKLLRTHGWCTHCRQWVFPVDRVLGLRDDSTASPLVQEMCALLVSKMPAEQAEALCLRVTGRSLSRSTLAREAQRQ
Ga0224536_1004849Ga0224536_10048491F022789MSYSSQTVGRSEAAESIATFEWRKLHLHVVTREPLSAGDERTIKRALPKVASVGQCADLVAMVLGRQVRIRTERPSPDIRLEVGR
Ga0224536_1005830Ga0224536_10058301F102123PPAEAERDRRRDHDLRAAEREGMRTGLAKQFKQVLDAQLKRAREAEEELLVDERRTREPKSSHRARRGAGQPPE
Ga0224536_1008248Ga0224536_10082481F086359MQISRVAALAGMLTVALSFSGRARGDAAKPKYYFTISNITSEDKTIITLAKYLLAKEISSRSEFTQDLGGAEGEAAATAEMKKRGLKGFQVNLRIATFKQEMKPPAPGRRDQQMAIQVKLGVYGTTYPGGKLNFTGDGEASLLGEFSERRRESDVQNLTRTALASALKQAVSTAVDKMST
Ga0224536_1008538Ga0224536_10085382F061452MEKQISTHANWWEKLGNPQYGGEINIRASRNIENFDPYFAESLTSIYGGWMERLISDDWTVDPAEWEYKMAWHPAKYM
Ga0224536_1013425Ga0224536_10134252F006412MTETPAAHDNTSRLGRFIQNYHGFLSSFVIGVAGLVATSIWQFRQAQNAERQQASEQAIARTKADNDWRIARAEILGKNLSVLSLQGPQSVDQRFGVLLSLTRGNILDPELAVSYALELGRDNPTYMAVVLAGTANKNYTQLEQAFALTCMQ
Ga0224536_1013432Ga0224536_10134321F069503LELRPLHQGAYSQFTLKGPVATVPQALQVRRLMSVLWLWHGSPVDVVLCVDGTNTGACWLEVWEDVLGRVPDHHLNLRYRISRNTLAQGTGHER
Ga0224536_1015539Ga0224536_10155392F002347MNQSTKTHLLQQIAGIPAMERGKLSRYTFKERSNASGPYHKLQRWQDGKNHTRYVSADELPAVQTALAGYAQFRQLTEQYADLVIEETRQHIAGSKKNQFRPESSSPRKKKSSN
Ga0224536_1016698Ga0224536_10166981F063193IYNMKKNLLLGFLILFVLSTTAFAGLSNPKKDSEKPAVLNTREIKLSNEELSRVTRRAEIDNLGKTNLLNNESSSSSKNLKATNQVYVETRHHRGYGMWYGGGGLLLVVILVIILV
Ga0224536_1018832Ga0224536_10188321F079956WTAFMAKLAEKDKYFSTVIMSITPMPVEKLIVLFDEMCKEFFNDDNMQYVMFGKAGAKGVLSPDGPYKSFMLTKDIKQFVESVLPKIWTMYFDSGVTTARLENNVAHIKITGIQIKYTYFEYLVMGYFQQAIKMFGKKSVAKKVRSIASGDKDIYFTYELKDS
Ga0224536_1019923Ga0224536_10199231F079498ADQGLYQIVQSELAAVGINMSITLKDDPSWQAFVMTGHLHDALAARGQGILGFNFDIFRQFMRFTPGYQSNYILVNDPVMVKFNNDAIAAQSVGAVQKLLHDCNLYVAQNHFAISLAQPSTFNMVQPWIMGAVGNNTLGDAVVGGGFADGAPLAVWINTSLKSSLGH
Ga0224536_1020052Ga0224536_10200521F014092MKKVLFVLVLMMSVLVINAQATKTTENKEKSIHTAIKVSDLKKSITDNIAKDYTGFTIKEAESVTKNNTLTYHVVIVKDATTETLVYDKEGKFVKIHAPKDATQQSSKKK
Ga0224536_1020200Ga0224536_10202001F057004MEAEKKTGFDASKPFVVPILSGGEKRCEVRFPSDEEWCAWARAQRTVRHFLGRGKSQSEDVDLPKINAELFAKIRTDKDGPEFDDAEA
Ga0224536_1020431Ga0224536_10204311F029963TAFILLGVGMARTEKQLQAAYDKGKISLKEFREALSKIGTARHARDIAKKKNRASMSSTKWF
Ga0224536_1021004Ga0224536_10210042F007212MSGSSTLNAAVNAIMQRTFGEPVAYQSAQAGVPVGDPITITAIRHARVREESGVMANVEEISVNPADLSTFPQRGDWVTAWGSQFVVTTVRQPDPYGLVQLSLM
Ga0224536_1021097Ga0224536_10210972F053900AYYERATLAQLLPFVIASVIDGTVLEQAQDMVKDGQPRGSSSPAEGGNLLAILLDIKKGYVKLDADEQQLLTWRHHESLTLAQIAGLLECAVSTADRRCINALRALQKHLGGESPFK
Ga0224536_1023084Ga0224536_10230841F028976MENKEKTTLLFTEKYDHNVLTHFIADKDYCAQADNFIKNTLSDAHPLPHEITCDCLLWKTKELPLLSIKGDTVDTTRMLMLWEGKGLAEFVFNSGKCHYSICRLHSLHRIERTDYSLIVMTQNALVPCAEIIIFGKYQLMYRLNV
Ga0224536_1024446Ga0224536_10244461F013964IIPDYDPYDPKPYPGDIKPGHYSKAKVKKLLKKNKDNPEALQFLRDMLE
Ga0224536_1024597Ga0224536_10245971F051240HVLKKYRDNPNLDNPIGPIKLIKPFMADGIWYCHGHEYDPSVQYIPHRLMWLWNHLPQKKLTPSNLKMNFITERYIMLVYLVQSRALINLQQKVKKEHQECKGIVFGHTHLPLYQRSPDLMFVLNDGDMRHSATFTIEDENEFRLMTWNGNQHQWLTIHIPKP
Ga0224536_1025232Ga0224536_10252321F104597GRVQLVYRGKLLKWRLLPEGGIRKQAAVKPARKEQRKPGAKPPAPNHPWRRDGVGLGRKYWSGIKVRGRAVRLGLPDSGQPPLRSGLPASGSPSRRNRVANNNRERGHSLVSYDGDISKE
Ga0224536_1027573Ga0224536_10275731F091193MTLPKWRVAIKLLAGKKDKQMELPHVEPDLVIGANILKIVTYINGTKNLTANVKLKPTGQITVDMLSLCLRGEKYEAKESEKFEDKAQEPIKVTPITITNPKSYIVFFDVPGESAINSEDVKIYALANNREY
Ga0224536_1029511Ga0224536_10295112F031772MFHSRRFRLIVTHNGTAVVVVCVTGEAIRQFVPVAWQGTVPVASWYGAIFAITVRVDFITIAVQVVC
Ga0224536_1030466Ga0224536_10304661F000272MSQTVLERTTEHIAESAHEASRATSAVVDATKNVAGAVRDAAKQGGDAAEEFLSDTTQRIQRHPILTVAASFAVGFTAGALLGRMMKRR
Ga0224536_1030940Ga0224536_10309401F094174GFNESPTPTDLEEDLTQAVTDFKDGIARDPAFVEPKIGAGSCLGYLMYLSKKDPKRVQELLQQSSPLLKEAMATAPDNPRLLWVLGPIRWSSPPERGGGQDKAIEIYNKGLEAVRNDKRDVVDPLEPSWGEPELLMNLAWSNLNRTAPDLKAAEQYAAAALNLVPY
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