| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023051 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272182 | Ga0233379 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 125592333 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048702 | Metagenome / Metatranscriptome | 147 | Y |
| F058575 | Metagenome / Metatranscriptome | 134 | Y |
| F059515 | Metagenome | 133 | Y |
| F059516 | Metagenome | 133 | Y |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| F072949 | Metagenome / Metatranscriptome | 120 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233379_1017428 | Not Available | 971 | Open in IMG/M |
| Ga0233379_1017915 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 958 | Open in IMG/M |
| Ga0233379_1033342 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 702 | Open in IMG/M |
| Ga0233379_1064463 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233379_1007202 | Ga0233379_10072021 | F048702 | VKIDKRIFKKEGEELQQYLHFRKRGGSVKPKKGKGSFDRKKFKKDIDN |
| Ga0233379_1017428 | Ga0233379_10174282 | F072949 | MAKRKVQTAKVVVDKNAAQFARTAANLARKGKTNKKLGRNPKAKKYAI |
| Ga0233379_1017915 | Ga0233379_10179152 | F072921 | MKSRLILTTDRKSASEGEYIEIRWACDACPDSLYLAIDSGCTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVTESIDVRVKSTKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLVLWLGLLFSSIGRKPEVKVSSDKIQTAYIFS |
| Ga0233379_1033342 | Ga0233379_10333421 | F059515 | QAIKIVGTLEVAESEDKPFTDMYGYEFNYKIVDATYTIIQADELSEDMALWQKIAETDVVSDIYRMYDYVNFLCAWNTYYVNSGTDENGNIVPGYYLYPTDAVYLITTDGAQYNYGYKDGYFDSIISKIEAVDPNAFADLVANVRSAEVLAQKALAELENEHYTSEKKYLEQFGTEDLVYTLTIGEELTAEMQMLYPAFANWLGSWEM |
| Ga0233379_1058583 | Ga0233379_10585831 | F058575 | ILGTRLMNAAEYFEQGQELRRNRKFGEAINAFRAAAAAPDCTEDIKRRSLASVELIQEINGFVNTDLMNP |
| Ga0233379_1064463 | Ga0233379_10644632 | F059516 | MRVDLLLKALPIMGYGYLGIFIVTIVIILVVSLLNKLTNKKDSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |