| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023048 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0132900 | Gp0272144 | Ga0233341 |
| Sample Name | Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-247 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 146497556 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Hypocreaceae → Trichoderma → Trichoderma gamsii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → litter layer → plant litter |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 40.2198 | Long. (o) | -122.9842 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030315 | Metagenome / Metatranscriptome | 185 | Y |
| F059667 | Metagenome / Metatranscriptome | 133 | Y |
| F085914 | Metagenome / Metatranscriptome | 111 | N |
| F091248 | Metagenome | 107 | N |
| F092248 | Metagenome / Metatranscriptome | 107 | Y |
| F106076 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233341_1004442 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | 2760 | Open in IMG/M |
| Ga0233341_1009964 | All Organisms → cellular organisms → Eukaryota | 1683 | Open in IMG/M |
| Ga0233341_1012559 | Not Available | 1448 | Open in IMG/M |
| Ga0233341_1025786 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 910 | Open in IMG/M |
| Ga0233341_1031834 | Not Available | 802 | Open in IMG/M |
| Ga0233341_1032674 | Not Available | 790 | Open in IMG/M |
| Ga0233341_1033824 | Not Available | 774 | Open in IMG/M |
| Ga0233341_1050810 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Hypocreaceae → Trichoderma → Trichoderma gamsii | 611 | Open in IMG/M |
| Ga0233341_1065263 | Not Available | 532 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233341_1004442 | Ga0233341_10044425 | F059667 | KTKCKAKNLFKVALLTEKPPQRNSTISCPIHGIALIRLVITVAPHNDICP |
| Ga0233341_1009964 | Ga0233341_10099642 | F092248 | LLRLLLPLSDKVYLTSHIRVEPERSPEGSPDHSKSVGATGGVYKGQGRNQHKMMTYAY |
| Ga0233341_1012559 | Ga0233341_10125592 | F030315 | VIKYNEFIIIIKYENISLIKNDVDALKYKYRIGLDTLLVYTIKYEY |
| Ga0233341_1025786 | Ga0233341_10257861 | F085914 | MKGMFGKTLARHFSLPRSTSLLLKSKSPAQVAMTRVTMPSGFPGPTPPIPPEQAFSVSVHLRRPDNAKGWGA |
| Ga0233341_1031834 | Ga0233341_10318341 | F091248 | MFANSNCLMIKCYTWQEELTMSKRQKKKAPMVEEQSAIEVVTQTEYIYEDTQCVSGVEPEYKWDEIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVVTQGTIFNWASLVS |
| Ga0233341_1032674 | Ga0233341_10326741 | F091248 | DALEKIITAALCSQFELLNIMMFTWQEKSTMSKRQKKKAPAVEEVPAAEVETKTEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYTNIEKSAIMKVATRPELFPCPEVMRWVLPNTNHNSMLMCNVEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDSLRMDFVETMKRMLLPGKLYRHRATEEYDTASLRPTYRFIALMLNWIFGRTNGRLLKFEWIPLMFYVATEGTIFNWESIVSSSLSSFVAAALEG |
| Ga0233341_1033824 | Ga0233341_10338241 | F091248 | MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKFEWVPLMFFIATEGTIFNWASIVSSNLSSCVAAASKGKE |
| Ga0233341_1050810 | Ga0233341_10508101 | F106076 | PSLIVNEETVYSTPWKPVNITANIIVNNNPYKAPLLFPCIKEWCAYVTVTPLDSNSTVLSKGSSKGLIASIPIGGHXAPNSTVGDKALXKKAQNIAKKNKASDAINKATPMFNPLWTANVWFPKYVPSLITSLNQNDIEEISNIKANTKKYPALEKPCITDTAVVVNVSNDILVYRGQKEGDTKXKGXAXKLLLIMFVITFFC |
| Ga0233341_1065263 | Ga0233341_10652631 | F091248 | QKRKAPAVEEQTAIKVVPQKEYIYEDTECIFGIEPEYKWGEIYRLISRREVRDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIAL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |