NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022826

3300022826: Saline water microbial communities from Ace Lake, Antarctica - #1331



Overview

Basic Information
IMG/M Taxon OID3300022826 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0255785 | Ga0222693
Sample NameSaline water microbial communities from Ace Lake, Antarctica - #1331
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size78299135
Sequencing Scaffolds50
Novel Protein Genes59
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
Not Available37
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G112
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakesaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010230Metagenome306Y
F029620Metagenome187N
F031722Metagenome181N
F039448Metagenome / Metatranscriptome163Y
F042665Metagenome157N
F043706Metagenome155Y
F044910Metagenome153Y
F052986Metagenome141Y
F060609Metagenome / Metatranscriptome132Y
F067269Metagenome125N
F078142Metagenome / Metatranscriptome116Y
F081868Metagenome114Y
F083694Metagenome112Y
F086363Metagenome111N
F091749Metagenome / Metatranscriptome107Y
F096357Metagenome104N
F098516Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0222693_100398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium10752Open in IMG/M
Ga0222693_102736All Organisms → Viruses → Predicted Viral2768Open in IMG/M
Ga0222693_102808All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2721Open in IMG/M
Ga0222693_103307Not Available2461Open in IMG/M
Ga0222693_103544Not Available2361Open in IMG/M
Ga0222693_104248Not Available2122Open in IMG/M
Ga0222693_105318All Organisms → Viruses → Predicted Viral1861Open in IMG/M
Ga0222693_105699Not Available1790Open in IMG/M
Ga0222693_106768Not Available1621Open in IMG/M
Ga0222693_108672Not Available1391Open in IMG/M
Ga0222693_109486All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter1312Open in IMG/M
Ga0222693_110438Not Available1236Open in IMG/M
Ga0222693_111820Not Available1135Open in IMG/M
Ga0222693_112824Not Available1074Open in IMG/M
Ga0222693_113061All Organisms → Viruses → Predicted Viral1060Open in IMG/M
Ga0222693_114239All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.1002Open in IMG/M
Ga0222693_115960Not Available928Open in IMG/M
Ga0222693_118692Not Available833Open in IMG/M
Ga0222693_120018Not Available795Open in IMG/M
Ga0222693_120019All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11795Open in IMG/M
Ga0222693_120422Not Available784Open in IMG/M
Ga0222693_121034Not Available768Open in IMG/M
Ga0222693_121250Not Available763Open in IMG/M
Ga0222693_122563Not Available731Open in IMG/M
Ga0222693_122819Not Available725Open in IMG/M
Ga0222693_123293All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter714Open in IMG/M
Ga0222693_123481Not Available710Open in IMG/M
Ga0222693_124310All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11692Open in IMG/M
Ga0222693_125194All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales674Open in IMG/M
Ga0222693_125397All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales670Open in IMG/M
Ga0222693_125448Not Available669Open in IMG/M
Ga0222693_126691Not Available646Open in IMG/M
Ga0222693_127114Not Available639Open in IMG/M
Ga0222693_127172Not Available638Open in IMG/M
Ga0222693_128016All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.624Open in IMG/M
Ga0222693_128265Not Available620Open in IMG/M
Ga0222693_128553Not Available616Open in IMG/M
Ga0222693_129049Not Available608Open in IMG/M
Ga0222693_129441Not Available602Open in IMG/M
Ga0222693_129911Not Available595Open in IMG/M
Ga0222693_130362Not Available589Open in IMG/M
Ga0222693_131006Not Available580Open in IMG/M
Ga0222693_131075Not Available579Open in IMG/M
Ga0222693_132266Not Available563Open in IMG/M
Ga0222693_133078Not Available553Open in IMG/M
Ga0222693_133259Not Available551Open in IMG/M
Ga0222693_133762Not Available545Open in IMG/M
Ga0222693_135330Not Available528Open in IMG/M
Ga0222693_135768Not Available523Open in IMG/M
Ga0222693_137764Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0222693_100398Ga0222693_10039811F078142MSLGIDTFNAVYNSLTIARCKIRIGRTVIAKALCSGIGKLRENTDEGQFGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLGLEAVNE
Ga0222693_100398Ga0222693_10039813F039448MNTTKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWDEKTDREFPLIDVRCSPPGHDDNESTLQVQCAILMGTKTDDDKSHAFISSMYEAVQDVCDTLFAQYKTRVFTGDDKEELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRSDF
Ga0222693_100398Ga0222693_10039814F098516MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDETPAWALAAVLADSGDAAVFMAEVTQDPGEDQGQAAWHTAAGAASFNLARLAS
Ga0222693_102736Ga0222693_1027365F029620MAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPVSGKRPLIAHCVADGSLTLTWQDTSTTVVGFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_102808Ga0222693_1028083F060609VNELQKSGAVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGTSDAYAATTGAGSFSLKGDSN
Ga0222693_103307Ga0222693_1033074F042665MTSPNLSFATLILLSSVVTVVVTLGVMPLLALTGSVSGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222693_103544Ga0222693_1035443F081868MTDKQETKKLPLAKGNSYGVSTAIWNNTNKAGTKYQSISLSASTKQTDGSYKNRTIFFPSDLENLIAALTELKANADAEGIQTGFVEKK
Ga0222693_104248Ga0222693_1042482F060609MLEPRTGESGDKRADSIDRRDFCKKALKRSSIVAAAGAVGYLAYKKPEIQSFFGAREAYANGTGPGRFSLRGDSN
Ga0222693_105318Ga0222693_1053181F029620MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWPDTSSTVVDFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_105699Ga0222693_1056992F042665MTPPKLSFATLIMLSSVVTVVVTLGVMPLLTLTGVGPGWGLFFAPVAGMAAGYSTARWLGGYIDDK
Ga0222693_106768Ga0222693_1067682F067269MIKSHTGSYTRALERQLPDRDASFFWDTNDSKKKRKGYRDGLKYDAVSGTKRERYRGYDIVYTRLKNSSFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNTNKTKTKTEQL
Ga0222693_108672Ga0222693_1086723F042665MTSPKMSFATLIMLSSVVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK
Ga0222693_109486Ga0222693_1094862F029620ELKQEWRTKMAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTNGKRPLIAHCVADGSLTLTWQDTSATVVDFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_110438Ga0222693_1104383F091749MLKSDEKSNAQNWELEVTCKNKKFLDAVVKAILSYGMIDFEVENVECMSNSDGWDGRYLVLMSCSWFSNLKKITKDLAKIEKKFENEL
Ga0222693_111820Ga0222693_1118201F042665MTPPKLSFATLILLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222693_112824Ga0222693_1128242F043706MRHILYGILSTALLVNLFAMALDTGQASVWLIILCGVVVIFAGGGKQQHPH
Ga0222693_112824Ga0222693_1128243F031722MHIDETATTQTQKVTKPMFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKR
Ga0222693_112824Ga0222693_1128244F042665MTSPKISFATLIMLSSVVTVVVTLGVIPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222693_113061Ga0222693_1130613F067269MIKSHTGSYTCALERQLPDSDASFFWDTTDSKKKRKGYRDGLKYDAVSGTKRKRYRGYDIVYTRLKNSSFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNNNKTKTEQTYDDRDRNS
Ga0222693_114239Ga0222693_1142392F029620MAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSSTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_115960Ga0222693_1159602F043706MRHILYGILSTALLVNLFAMALDTGQPSIWAIILCAVVIIFAGGGKQQHPH
Ga0222693_115960Ga0222693_1159603F031722MHIDETATTQTQTQKVTKPMFYPEQAAAEKLGLNKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222693_115960Ga0222693_1159604F042665MTPPKLSFATLILLSSVVTVVVTLGVMPLLTLTGLVSGSGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222693_118692Ga0222693_1186922F067269MIKSHTGSYTCALDRQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRRKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMFDEWIDNNNNNKTKTEQTYDDRDRNS
Ga0222693_120018Ga0222693_1200181F042665MTSPKISFATLILLSSGVTVVVTLGVIPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222693_120018Ga0222693_1200182F031722MDETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222693_120019Ga0222693_1200191F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAERKRNPSLIRAAALVVASATGKLSKQQGYMAFDFTRYVEAHEYELVQVVRRRTGGGRTAEIRKEEAAERMKTGFSIYLKLDTLERDKCGIIAKRMGCKVDTVRGWKRKGWRSG
Ga0222693_120422Ga0222693_1204222F042665MTSPKLSFATLIMLSAMVTVVVTLGVMPLLALTGVGPGWGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222693_120422Ga0222693_1204223F031722MDETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222693_121034Ga0222693_1210342F043706MRPILYGILSTALLVNLLFMALDTGQPSVWLLILCAVAIIFAGGAENRGSGR
Ga0222693_121250Ga0222693_1212501F010230INGNELRLLQYRQVKLKLVPLLVSINGKELRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLLQLYQVEVKLVPLLVSINGNELRLVQFCQVELK
Ga0222693_122563Ga0222693_1225632F044910MIHDAHTKKTSAAVAAEVGTNILVAAKDDAYIYVHELIGDLASAGNLTIMAGDRTLASFTLDAGQGITEQDEPGMHGVPRFECKPGESFKLVVTGGTFSGSIDYSFRY
Ga0222693_122819Ga0222693_1228191F042665MTSPKISFATLIKLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPVAGMAAGYSAARWLGGYIDDK
Ga0222693_123293Ga0222693_1232931F029620VFPLRQGLIDITTGTVTDPTNGKRPLIAHCVADGSLTLTWQDTSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_123481Ga0222693_1234811F043706MRHILYGILSTALLVNLFAMALDTGQPSVWVLILCAVVIIFAGGGK
Ga0222693_124310Ga0222693_1243101F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWFLCYQEDLAQAESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIAKRMGCKVDTVREWRRKGWRSG
Ga0222693_125194Ga0222693_1251941F029620KQEWRTKMAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPVSGRRPLIAHCVADGSLTLTWSDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_125397Ga0222693_1253972F029620MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVAEGSLTLTWSDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_125448Ga0222693_1254481F096357MNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0222693_126691Ga0222693_1266911F029620MAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_127114Ga0222693_1271141F031722IDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTRFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222693_127114Ga0222693_1271142F042665MTPPKISFATLILLSSVVTVVVTLGVIPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222693_127172Ga0222693_1271722F031722MHIDETATTQTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKP
Ga0222693_128016Ga0222693_1280161F052986MIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSAIEQYRMEQA
Ga0222693_128265Ga0222693_1282651F029620AQVFPLRKGLIDITTGTVTDPVSGKRPLIAHCVADGSLTLTWQDDSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_128553Ga0222693_1285532F043706MHILYGILSTALLVNLFAMALDTGQPSVWLIILCAVVIIFAGGGK
Ga0222693_129049Ga0222693_1290492F029620MAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPTNGKRPLIAHCVADGSLTLTWQDTSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222693_129441Ga0222693_1294412F052986MIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSAIEQYRMEQAHRER
Ga0222693_129911Ga0222693_1299111F043706MRPILYGILSTALLVNLFAMALDTGQPSVWVLILCAVVIIFAGGGK
Ga0222693_130362Ga0222693_1303622F083694MDKVEKLHKRQLARLLSHLEKTGQLTLELEKDLKRAYRFAFEDVETLLQGLDKENKNVENGA
Ga0222693_131006Ga0222693_1310061F042665SPKMSFATLIMLSSVVTVVVTLGVIPLLALTGSVYMLVFAPAAGMAAGYSTARWLGGYIDDK
Ga0222693_131075Ga0222693_1310752F043706MRHILYGILSTALLVNLFAMALDTGQASVWLIILCAVVIIFAGGGKQQHPH
Ga0222693_132266Ga0222693_1322661F031722MDETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222693_133078Ga0222693_1330781F086363MKREVKAPKGAQIKAPEAPRSEIRQFGNAIEYMVDQMAQRWRTQIFKELNQDTISKFSDAAQEGNFAKIFLAMAARVRRKLLKQFDDKRIEDLAKKYTSKVDNRNRAEFYRRAE
Ga0222693_133259Ga0222693_1332592F067269MIKSHTGSYTCALDRQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRARYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNTLKTEDTEEVYAMLDEWIDNNNNSRYKKERF
Ga0222693_133762Ga0222693_1337622F031722MDETATTQTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGTRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222693_135330Ga0222693_1353302F067269MIKSHTGSYTCALERRLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVCTRLKNSNFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNNNKTKTEQL
Ga0222693_135768Ga0222693_1357681F067269MIKSHTGSYTRALDRQLPDSDASFFWDTTDSKKKRKGYRDGLKYDAVSGTKRARYRGYDIVYTRLKNSSFCAHTIDVLGEGAGFEKNTLKSEDTEEVYAMLDEWIDNNNTNKTKTEQTYDDRDRNS
Ga0222693_137764Ga0222693_1377641F029620MAQQLRMLPASSGGAAQVFPLRKGLIGITSGTVTDPTSGKRPLIAHCVAEGSLTLTWQDTSSTVVGFIAGDDFSMVEASS

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