NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022150

3300022150: Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Illumina Assembly)



Overview

Basic Information
IMG/M Taxon OID3300022150 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0191402 | Ga0163216
Sample NameSaline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Illumina Assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size162843329
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales2
Not Available1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4717Long. (o)78.1877Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082368Metagenome113Y
F098920Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0163216_102087All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae8377Open in IMG/M
Ga0163216_102392All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae6728Open in IMG/M
Ga0163216_102673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae5639Open in IMG/M
Ga0163216_102954All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis4819Open in IMG/M
Ga0163216_103061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales4574Open in IMG/M
Ga0163216_103096All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae4520Open in IMG/M
Ga0163216_104457Not Available2725Open in IMG/M
Ga0163216_104826All Organisms → cellular organisms → Bacteria2474Open in IMG/M
Ga0163216_106092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis1866Open in IMG/M
Ga0163216_106430All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis1754Open in IMG/M
Ga0163216_107306All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis1521Open in IMG/M
Ga0163216_108897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis1244Open in IMG/M
Ga0163216_113966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis806Open in IMG/M
Ga0163216_114917All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → Roseovarius gahaiensis755Open in IMG/M
Ga0163216_120000All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales559Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0163216_102087Ga0163216_1020873F082368MEIELWTLFDALMKWVIIPMAAILWVHNQKLGSHEKEVLRIMTLLSERKDQRDEDRAELKEALRDLRAAILRLDQRLADFTLAQTALTPGPRSVPGTQTRRAKG
Ga0163216_102392Ga0163216_1023925F082368MEIELWTLFDALMKWVIIPMAAMLWVHNQKLGTHEKEVLRIMTLLSERKDQRDEDRAELKEALRDLRAAILRLDQRLADFALAQTAQAPGPRPVSSTQARRAKG
Ga0163216_102673Ga0163216_10267311F082368MEIELWTLFDALMKWVIIPVAAVLWVHNQKLGSHEKEVLRIMTLLAERKDQRDEDRAELKEALRDLRAAILRLDQRLADFALAQSIQPVQPAAPRAATGIPARRGKG
Ga0163216_102954Ga0163216_1029547F098920MIIKIISTSRDMVGDLATIRAEIHEQRAGFIRVKDTIEIEITGGARMNDAQLIAAIQEVYHG
Ga0163216_103061Ga0163216_1030614F082368MEIELWTLFDALMKWVIIPVAAVLWVHNQKLGTHEKEVLRIMTLLAERKDQRDEDRAELKEALRDLRAAILRLDQRLADFALAQTAQAPGPRPVSSTQVRRAKG
Ga0163216_103096Ga0163216_1030969F082368MEIELWTLFDALMKWVIIPMAAMLWVHNQKLGTHEKEVLRIMTLLSEHKDQRDEDRAELKEALRDLRAAILRLDQRLADFALVQTAQAPGPRPVSNTQARRAKG
Ga0163216_104457Ga0163216_1044572F098920MIIKIISTSRDMVGDLATIRAEIHEQRAGFTRVRDTIEVEITGGARMDDAELTARIEEIYHG
Ga0163216_104826Ga0163216_1048263F082368MEIELWTLFDALMKWVIIPMAAILWVHNQKLGSHEKEVLRIMTLLAERKDQRDEDRAELKEALRDLRAAILRLDQRLADFTLAQTAQTPGPRSVPGTQARRAKG
Ga0163216_106092Ga0163216_1060924F098920MIIKILSTSRDMVGDTATIRAEVHEQRTGFTRVRDTIEIAIEGGARMNDAQLIARIEEVYHG
Ga0163216_106430Ga0163216_1064303F098920MIIKILSTSRDMVGDTATIRAEIHEQRTGFTRVRDTIEIAIEGGARMNDAQLIARIEEVYHG
Ga0163216_107306Ga0163216_1073064F098920MIIKILSTSRDMVGDTATIRAEIHEPRQAFTRVRDTIEIKITGGARMNDAQLIAAIEEVYHG
Ga0163216_108897Ga0163216_1088972F098920MIIKILSTSRDMVGDTATIRAEVHEQRTGFTRVRDTIEIDIEGGARMNDTQLMAKIEEVYHG
Ga0163216_113966Ga0163216_1139662F098920MIIKILSTSRDMVGDTATIRAEVHEQRTGFTRVRDTIEIDIEGGARMNDTQLMAKI
Ga0163216_114917Ga0163216_1149172F098920MSIKILSTSRDMVGDTATIRAEVHEQRTGFTRVRDTIEIAIEGGARMNDTQLMAKIEEVYHG
Ga0163216_120000Ga0163216_1200002F082368MEIELWTLFDALMKWVIIPMAAILWVHNQKLGTHEKEVLRIMTLLSERKDQRDEDRAELREALRDLRSAILRLDQRLADFALAQTAQAPGPRPVSSTQARRAKG
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