NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021546

3300021546: Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg24is 200bp no Eukaryotes last



Overview

Basic Information
IMG/M Taxon OID3300021546 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124747 | Ga0224702
Sample NameMarine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg24is 200bp no Eukaryotes last
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72821257
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → unclassified viruses → Virus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002192Metagenome / Metatranscriptome585Y
F030459Metagenome / Metatranscriptome185N
F034602Metagenome174N
F065466Metagenome127Y
F100995Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224702_1010840Not Available656Open in IMG/M
Ga0224702_1023229Not Available561Open in IMG/M
Ga0224702_1032741Not Available616Open in IMG/M
Ga0224702_1044610All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.566Open in IMG/M
Ga0224702_1075248All Organisms → cellular organisms → Bacteria537Open in IMG/M
Ga0224702_1082489Not Available865Open in IMG/M
Ga0224702_1094552All Organisms → Viruses → unclassified viruses → Virus sp.1380Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224702_1010840Ga0224702_10108401F065466MRAIAPLLLCLLSALVEVHSQTVPYVSFMGTNLTNHSYVDLTLVGSALDGSDSVQCHTDLSTCCSGDQGDDRGDWYFPNGDRLQFNIGSIDIYEVRVAQRVDLRRRNNGTSGIHRCTIEANAVHSNDDSDPTTRETVYVGLYASGGE
Ga0224702_1023229Ga0224702_10232292F065466YSSPGAFVSFMGTNLPNHSYVDLTLVGSAVDGSDSVHCHTDLVTCCSSVQGVDRGDWYFPNTMRLNFLGDPGDIHEWRGPQLVDLRRKNNSDTSGIYRCTIETNAVHSDDIIDTTTRETVYAGLYASGGECAHGEEFQ
Ga0224702_1032741Ga0224702_10327411F100995MTDKQLVKRIIDLALKIKETEQLTKVSEELRTMEIEKMFTTKEGKYYTLNT
Ga0224702_1044610Ga0224702_10446103F034602YDVGMTNRFKEILPPHTKEEKSYPQLISLGIMLLGILIIDIMGYYHGNMTLLEVLKNL
Ga0224702_1067563Ga0224702_10675631F065466APYVSFMGTNLPNHSYVDLNLVGYALDGGDSVQCHTDLSTCCNATQGADRGDWYFPNGDRLQFSDYPGNIYERRAAQRVDLRRSYNGDTSGIYRCTVETNAVHSDDFSDNTTRETVYAGLYASGGECVHGEEFEYSQ
Ga0224702_1075248Ga0224702_10752482F030459MVDIIKKRVIDWDNQLRKEKHFNEKFGTNLSPSCVKELTGSFRRLTEKSKNKIGDGTLEQCEEFYLSLDLMKQNQYIHICKNRSAAFYKIGDEPDSDKNNSDYQNDFSEWDEKLNEFKSQNGWDKFSN
Ga0224702_1082489Ga0224702_10824891F065466MKATVMSVLLCLLSALVEVHSQTVPYVSFMGTNLPNHSYVDLTLVGRAEGGSDSVQCHTDLQACCSGAQGAHRGDWYFPNGDRLMFSNGPGNIYESREAQRVDLLRRNNGDTSGIYRCTIETSSVRSDNGSKTQETVYAGLYASGGECTHMCI
Ga0224702_1094552Ga0224702_10945523F002192MHQVLLYFSSITAIIALFFGLYACGRVARVLSATKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGAKQNGKIVGG
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